| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1561486 = | 103 (1.260) | 11 (0.150) | 3/86 | NT | 11.3% | coding (139/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit |
| ? | AP009048 | 1561513 = | 83 (1.160) | coding (112/897 nt) | ddpC | D‑Ala‑D‑Ala transporter subunit | |||||
Only 100 of 139 total aligned reads displayed.
GGCAAAAGGCGGGCGGTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATAC > AP009048/1561419‑1561555 | acgcgatttaacggtgcaaaactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagtcat < 1:2385834‑M1/4‑1 (MQ=255) cgcgatttaacggtgcaaaactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagtcatc > 1:1433294‑M1/67‑71 (MQ=255) gcgatttaacggtgcaaaactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagtcatca > 1:4043853‑M1/66‑71 (MQ=255) gcgatttaacggtgcaaaactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagtcatca > 1:1295362‑M1/66‑71 (MQ=255) gcgatttaacggtgcaaaactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcaggcatca > 1:1538118‑M1/66‑71 (MQ=255) aaGGCGGGCGGTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCaa > 1:713278/1‑69 (MQ=255) aaGGCGGGCGGTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCaa > 1:5555184/1‑69 (MQ=255) aaGGCGGGCGGTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCaa > 1:6610703/1‑69 (MQ=255) ggTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATa > 1:2627349/1‑71 (MQ=255) ttAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATAc > 1:4867696/1‑70 (MQ=255) ttAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACa < 1:4749371/71‑1 (MQ=255) tAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACaa > 1:2701822/1‑71 (MQ=255) aaaTCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAatcatc > 1:6939364/1‑51 (MQ=255) aaaTCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAatcat > 1:1201023/1‑50 (MQ=255) aactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAat < 1:568462‑M1/22‑1 (MQ=255) aactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAat < 1:6872523‑M1/22‑1 (MQ=255) aactggtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAat < 1:7915620‑M1/22‑1 (MQ=255) aaTCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCa < 1:5080903/60‑1 (MQ=255) aTCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatga > 1:5730663/1‑71 (MQ=255) cAATGGCGTTGGGATCATGCGTCTCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat > 1:3979010/1‑70 (MQ=255) cAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat < 1:207224/70‑1 (MQ=255) cAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat > 1:6639221/1‑70 (MQ=255) aaTGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAAt > 1:553030/1‑61 (MQ=255) aaTGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAAtgatga > 1:3703134/1‑71 (MQ=255) aaTGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAAtgatga > 1:5603730/1‑71 (MQ=255) gtatggatgctgaaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAAtgatga > 1:607866‑M1/44‑70 (MQ=255) tGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTa > 1:6136289/1‑57 (MQ=255) tGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACt < 1:2825171/71‑1 (MQ=255) gggATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat < 1:3215345/60‑1 (MQ=255) gggATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTg < 1:2939189/70‑1 (MQ=255) gATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCAt < 1:5607269/46‑1 (MQ=255) gATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATAc < 1:3433678/52‑1 (MQ=255) aTCATGCGTCGCCAGCTACGGTGAAAAAatcatcatc < 1:7816492/37‑1 (MQ=255) aTCATGCGTCGCCAGCCACGGTGAAAAAatcatcatc < 1:5028416/37‑1 (MQ=255) aTCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTa < 1:492400/47‑1 (MQ=255) aTCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATAc < 1:7661571/51‑1 (MQ=255) aTCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATAc < 1:1176744/51‑1 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAg > 1:1481951/1‑41 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAg > 1:1258145/1‑41 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACa < 1:3984187/51‑1 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACa < 1:1884144/51‑1 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat > 1:3939244/1‑56 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCAc < 1:3320422/71‑1 (MQ=255) tCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCAc < 1:1559210/71‑1 (MQ=255) aaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAatgatg < 1:1660360‑M1/26‑1 (MQ=255) aaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAAtgatga < 1:5229755‑M1/27‑1 (MQ=255) aaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAAtgatga < 1:4723081‑M1/27‑1 (MQ=255) aaaggcagtccgctcaccgtgaccagcgcagTCATCAATAGCATTAATACAAtgatga < 1:6344383‑M1/27‑1 (MQ=255) aTGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACgg > 1:650654/1‑71 (MQ=255) aTGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACg < 1:5033361/70‑1 (MQ=255) gTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAatgat < 1:1128451/50‑1 (MQ=255) gTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAg > 1:4859919/1‑71 (MQ=255) tCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAg > 1:6040774/1‑70 (MQ=255) gccagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGa > 1:3867187/1‑67 (MQ=255) gccagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGa > 1:7322228/1‑67 (MQ=255) gccagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCgg < 1:7054780/71‑1 (MQ=255) gccagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCg > 1:635040/1‑70 (MQ=255) cagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGAc > 1:2158048/1‑71 (MQ=255) cagccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGAc > 1:4489056/1‑71 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAatg < 1:5095238/42‑1 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACt > 1:3250029/1‑48 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACt > 1:3921829/1‑48 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACt > 1:2638366/1‑71 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACt < 1:7282228/71‑1 (MQ=255) agccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACt > 1:6313994/1‑71 (MQ=255) gccaCGGTGAAAAAATCATCATCAATAGCATTAATa < 1:55269/36‑1 (MQ=255) gccaCGGTGAAAAAATCATCATCAATAGCATTAATa < 1:1850987/36‑1 (MQ=255) gccaCGGTGAAAAAATCATCATCAATAGCATTAATa < 1:6773872/36‑1 (MQ=255) gccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCg < 1:2951941/66‑1 (MQ=255) gccaCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCg < 1:1243002/66‑1 (MQ=255) caCGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGa > 1:6799645/1‑66 (MQ=255) aCGGTGAAAATATCATCATCTATAGCATTAATACAATGATGACTgc < 1:2289744/46‑1 (MQ=255) cGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCtt < 1:7165896/71‑1 (MQ=255) cGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCtt < 1:3132654/71‑1 (MQ=255) ggTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCg < 1:5101920/61‑1 (MQ=255) ggTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCttt > 1:3598274/1‑71 (MQ=255) gTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTc < 1:409017/71‑1 (MQ=255) tGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACg < 1:6390015/52‑1 (MQ=255) tGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACg < 1:5627779/52‑1 (MQ=255) gAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCg > 1:7603285/1‑58 (MQ=255) aaaaaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCtt < 1:6213881/66‑1 (MQ=255) aaaaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCa > 1:5922827/1‑71 (MQ=255) aaaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTg < 1:6573421/51‑1 (MQ=255) aaaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTg < 1:4699656/51‑1 (MQ=255) aaaaTAATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTc > 1:6818096/1‑66 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTgcg > 1:5673223/1‑38 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGa < 1:5898104/51‑1 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGa < 1:4210424/51‑1 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGa < 1:1438176/51‑1 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATc < 1:434276/71‑1 (MQ=255) aaaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATc > 1:5230881/1‑71 (MQ=255) aaTCATCATCAATAGCATTAATACAATGATGACTg > 1:6464019/1‑35 (MQ=255) aaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTg > 1:3576275/1‑49 (MQ=255) aaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTg > 1:4815197/1‑49 (MQ=255) aaTCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTc > 1:2945488/1‑64 (MQ=255) atcatcatcAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGc > 1:6397443/1‑66 (MQ=255) tcatcatcaATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAg < 1:7458473/49‑1 (MQ=255) tcatcatcaATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCa > 1:3357127/1‑70 (MQ=255) atcatcaATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGa > 1:6667231/1‑51 (MQ=255) atcatcaATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATAc > 1:4452243/1‑71 (MQ=255) | GGCAAAAGGCGGGCGGTTAAATCAATGGCGTTGGGATCATGCGTCGCCAGCCACGGTGAAAAAATCATCATCAATAGCATTAATACAATGATGACTGCGCTGGTCACGGTGAGCGGACTGCCTTTCAGCATCCATAC > AP009048/1561419‑1561555 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |