| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1854251 = | 53 (0.650) | 5 (0.080) | 3/76 | NT | 14.1% | intergenic (+9/+84) | pncA/ydjE | nicotinamidase/pyrazinamidase/predicted transporter |
| ? | AP009048 | 1854284 = | 20 (0.320) | intergenic (+42/+51) | pncA/ydjE | nicotinamidase/pyrazinamidase/predicted transporter | |||||
TTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1854331‑1854251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtaggccaAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATC > AP009048/1854284‑1854353 TTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAA > 1:1927106/1‑71 TCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAA < 1:5136852/69‑1 GTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGT < 1:7876704/71‑1 GTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTG < 1:2083529/70‑1 TTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTA < 1:3544307/71‑1 ATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGC < 1:6772656/71‑1 ATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGG < 1:1287182/70‑1 ATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGG < 1:6810512/70‑1 TGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGC > 1:5322029/1‑70 CAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTA < 1:7918114/61‑1 CAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTA < 1:3214406/61‑1 CAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTA < 1:2267813/61‑1 ATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGG > 1:6614034/1‑61 ATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTG < 1:1974448/49‑1 TGCCACTGACGTGTTTTATTTGGCCTACAATGCAAGTACAGAATTGTAGGCCA > 1:1870129/1‑53 TGTTTTATTTGGCCTACAATGCCAGTACAGAATTG < 1:1698698/35‑1 TGTTTTATTTGGCCTACAATGCCAGTACAGAATTG < 1:3827234/35‑1 TTTTATTTGGCCTACAATGCCAGTACAGAATTGTA > 1:1743350/1‑35 GCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGA < 1:7319545/65‑1 GCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGA < 1:5385990/65‑1 GCCTACAATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGA < 1:3175905/65‑1 AATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCC > 1:110357/1‑63 AATGCCAGTACAGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCT < 1:533095/50‑1 ATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCAC > 1:7538200/1‑71 TTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACC > 1:7745956/1‑71 TGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCT > 1:5762216/1‑71 TGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAT < 1:6222413/60‑1 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATTAACGAAAGATTTAATTCACCT > 1:1726798/1‑70 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCT < 1:3119444/70‑1 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCT < 1:5554007/70‑1 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCT < 1:5972701/70‑1 GTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCC > 1:4138177/1‑46 TAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAA < 1:7231760/62‑1 AGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAT < 1:3124304/57‑1 GGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATC < 1:3527238/46‑1 GGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATC < 1:7112750/46‑1 GGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATC < 1:1967205/46‑1 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATT > 1:2039966/1‑60 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATT > 1:5302191/1‑60 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATT > 1:5009568/1‑60 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATT > 1:1676946/1‑60 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACG < 1:5907531/48‑1 CCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAA > 1:6006447/1‑46 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAt > 1:2827622/1‑55 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATC < 1:3477748/71‑1 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGA < 1:3001150/51‑1 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGA < 1:3497761/51‑1 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGA < 1:4046675/51‑1 AAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGA < 1:2776579/51‑1 AAATAAAACACGTCAGTGGCACATCTGGCAATTGAT < 1:7090300/36‑1 TTTCGTTGATGGCATCAATTGCCAGATGTGCCACTGACGTGTTTTATTTGGCCTACAATGCCAGTACAGAATTGTAGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/1854331‑1854251‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attgtaggccaAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATC > AP009048/1854284‑1854353 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |