| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 1854251 = | 53 (0.650) | 5 (0.080) | 3/76 | NT | 14.1% | intergenic (+9/+84) | pncA/ydjE | nicotinamidase/pyrazinamidase/predicted transporter |
| ? | AP009048 | 1854284 = | 20 (0.320) | intergenic (+42/+51) | pncA/ydjE | nicotinamidase/pyrazinamidase/predicted transporter | |||||
GATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTG > AP009048/1854182‑1854316 | gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt < 1:3477748‑M1/1‑1 (MQ=255) agcagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTa > 1:6539823/1‑70 (MQ=255) agcagcTGGGGCAACGCTATATACGCTGGAAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCt > 1:4811160/1‑64 (MQ=255) cagcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACACGGGTAATTTT‑ACGCTGGCCTACaa > 1:7574434/1‑71 (MQ=255) aggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTAc < 1:5554007‑M1/8‑1 (MQ=255) aggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTAc < 1:5972701‑M1/8‑1 (MQ=255) aggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTAc < 1:3119444‑M1/8‑1 (MQ=255) aggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTACa > 1:5762216‑M1/63‑71 (MQ=255) aggtgaattaaatctttcgttaatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTAc > 1:1726798‑M1/63‑70 (MQ=255) ggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTACaa > 1:7745956‑M1/62‑71 (MQ=255) agcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAAt < 1:2982597/71‑1 (MQ=255) gtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTACAAt > 1:7538200‑M1/61‑71 (MQ=255) aattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTgg > 1:1676946‑M1/58‑60 (MQ=255) aattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTgg > 1:2039966‑M1/58‑60 (MQ=255) aattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTgg > 1:5009568‑M1/58‑60 (MQ=255) aattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTgg > 1:5302191‑M1/58‑60 (MQ=255) gggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCt < 1:6772443/69‑1 (MQ=255) ttaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTa < 1:7231760‑M1/7‑1 (MQ=255) ggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTa > 1:5727871/1‑71 (MQ=255) ataaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt > 1:2827622‑M1/56‑56 (MQ=255) gCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTAc < 1:2945294/71‑1 (MQ=255) atctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCt < 1:3124304‑M1/6‑1 (MQ=255) atctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattTGGCCTACa < 1:6222413‑M1/9‑1 (MQ=255) tctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt < 1:4046675‑M1/1‑1 (MQ=255) tctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt < 1:3001150‑M1/1‑1 (MQ=255) tctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt < 1:2776579‑M1/1‑1 (MQ=255) tctttcgttgatggcatcaattgccagatgtgccactgacgtgttttattt < 1:3497761‑M1/1‑1 (MQ=255) cGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTgg > 1:3385310/1‑70 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCa > 1:4666866/1‑71 (MQ=255) atataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGt < 1:391707/61‑1 (MQ=255) tataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCAtt < 1:6191812/69‑1 (MQ=255) tataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACAGGCAtt < 1:16038/69‑1 (MQ=255) cgttgatggcatcaattgccagatgtgccactgacgtgttttattTgg < 1:5907531‑M1/3‑1 (MQ=255) ataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTc > 1:6109114/1‑56 (MQ=255) ataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGATGGCCTACAATTCTGTACTGGCATTGt < 1:1357240/70‑1 (MQ=255) ttgatggcatcaattgccagatgtgccactgacgtgttttattTgg > 1:6006447‑M1/44‑46 (MQ=255) taCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAg < 1:833430/71‑1 (MQ=255) aCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTg < 1:3866582/56‑1 (MQ=255) gatggcatcaattgccagatgtgccactgacgtgttttattTGGcc < 1:3527238‑M1/5‑1 (MQ=255) gatggcatcaattgccagatgtgccactgacgtgttttattTGGcc < 1:1967205‑M1/5‑1 (MQ=255) gatggcatcaattgccagatgtgccactgacgtgttttattTGGcc < 1:7112750‑M1/5‑1 (MQ=255) cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAgg < 1:1798248/70‑1 (MQ=255) gCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAgg < 1:5736865/69‑1 (MQ=255) cTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCa < 1:2470603/71‑1 (MQ=255) tGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTAc < 1:4416141/55‑1 (MQ=255) tGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCa > 1:6155351/1‑70 (MQ=255) ggcatcaattgccagatgtgccactgacgtgttttattTGGCCTAc > 1:4138177‑M1/39‑46 (MQ=255) ggcatcaattgccagatgtgccactgacgtgttttattTGGCCTACAATTCTGTACTGGCAtt > 1:110357‑M1/39‑63 (MQ=255) gCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaaa > 1:1011113/1‑70 (MQ=255) atcaattgccagatgtgccactgacgtgttttattt < 1:7090300‑M1/1‑1 (MQ=255) tcaattgccagatgtgccactgacgtgttttattTGGCCTACAATTCTGTACTGGCATTGTAGGc < 1:5385990‑M1/31‑1 (MQ=255) tcaattgccagatgtgccactgacgtgttttattTGGCCTACAATTCTGTACTGGCATTGTAGGc < 1:7319545‑M1/31‑1 (MQ=255) tcaattgccagatgtgccactgacgtgttttattTGGCCTACAATTCTGTACTGGCATTGTAGGc < 1:3175905‑M1/31‑1 (MQ=255) aGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa > 1:7255080/1‑70 (MQ=255) gACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaa > 1:2553087/1‑70 (MQ=255) gACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaa > 1:3288055/1‑70 (MQ=255) gACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATaa > 1:3215590/1‑70 (MQ=255) cTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCt < 1:4686138/36‑1 (MQ=255) tGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTa < 1:6313420/57‑1 (MQ=255) gggAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTa < 1:802934/56‑1 (MQ=255) ggAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACg > 1:3362589/1‑71 (MQ=255) gAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTa > 1:4405481/1‑43 (MQ=255) agatgtgccactgacgtgttttattTGGCCTACAATTCTGTACTGGCAtt < 1:533095‑M1/25‑1 (MQ=255) agagACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACt < 1:6538820/43‑1 (MQ=255) agagACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACt < 1:539802/43‑1 (MQ=255) agagACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaa > 1:5742516/1‑58 (MQ=255) agagACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATa > 1:6087812/1‑61 (MQ=255) gagaCACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAg > 1:3601530/1‑71 (MQ=255) agaCACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGt < 1:7442556/38‑1 (MQ=255) agaCACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGt > 1:4958241/1‑71 (MQ=255) cacaGGGGTAATTTTAACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTgg < 1:4492182/71‑1 (MQ=255) aGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGcaca > 1:7239430/1‑71 (MQ=255) ggggTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACAt < 1:5534566/71‑1 (MQ=255) gTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCa < 1:4764594/59‑1 (MQ=255) aTTTT‑ACGCTGGCCTACAATTCTGTACTGTCATTGTAGGCCAAATAAAACACGTCAGTGCCACATCTGGc > 1:1494026/1‑70 (MQ=255) aTTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAg > 1:1002687/1‑38 (MQ=255) aTTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACg > 1:5712110/1‑53 (MQ=255) aTTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGt > 1:6604278/1‑54 (MQ=255) aTTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGt > 1:4026036/1‑54 (MQ=255) ttt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTa > 1:5070092/1‑35 (MQ=255) ttt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTa > 1:3989048/1‑35 (MQ=255) tt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGc < 1:6978976/67‑1 (MQ=255) tt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGc < 1:337237/67‑1 (MQ=255) tt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt > 1:690852/1‑71 (MQ=255) tt‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt > 1:934214/1‑71 (MQ=255) tt‑ACGCTGGCCTACAATTCTGTACTGGAATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAtt > 1:5736835/1‑71 (MQ=255) aCGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTg < 1:5359756/70‑1 (MQ=255) aCGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTg < 1:7362072/70‑1 (MQ=255) TGGCCTACAATTCTGTACTTGCATTGTAGGCCAAATAAAACACGTCAGTGGca > 1:1870129‑M1/1‑53 (MQ=255) | GATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTT‑ACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTG > AP009048/1854182‑1854316 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |