| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2001716 = | 73 (0.900) | 7 (0.100) | 3/84 | NT | 10.3% | intergenic (‑99/+6) | yedO/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| ? | AP009048 | 2001741 = | 60 (0.860) | coding (782/801 nt) | fliY | cystine transporter subunit | |||||
AAATGCAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2001789‑2001716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCA > AP009048/2001741‑2001807 AAATGCAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAAT > 1:6692440/1‑69AAATGCAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAAT > 1:7701849/1‑69AAATGCAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAAT > 1:3074320/1‑69 GGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAG < 1:292551/58‑1 GGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAG < 1:1461892/58‑1 CAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAG > 1:5870365/1‑49 CAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAG > 1:464954/1‑49 CAAGCCCTATCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAG > 1:1795443/1‑49 AAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATC < 1:4141469/46‑1 CCGAAAAATGGTTTGGTGCTGATGTGACCAAATAA < 1:7386460/35‑1 CCGAAAAATGGTTTGGTGCTGATGTGACCAAATAA < 1:2163999/35‑1 CCGAAAAATGGTTTGGTGCTGATGTGACCAAATAA < 1:3346431/35‑1 CCGAAAAATGGTTTGGTGCTGATGTGACCAAATAA < 1:5132048/35‑1 GCTGATGTGACCAAATAATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCAT > 1:254423/1‑71 GTGACCAAATAATCAGCACCAAACCATTTTTCGGAA < 1:2817314/36‑1 GTGACCAAATAATCAGCACCAAACCATTTTTCGGAA < 1:5653752/36‑1 GACCAAATAATCAGCACCAAACCATTTTTCGGAAAG > 1:7834631/1‑36 GACCAAATAATCAGCACCAAACCATTTTTCGGAAAG > 1:5219453/1‑36 GACCAAATAATCAGCACCAAACCATTTTTCGGAAAG > 1:7524283/1‑36 GACCAAATAATCAGCACCAAACCATTTTTCGGAAAG > 1:4667971/1‑36 ATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCAT > 1:7379559/1‑71 ATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGC < 1:2254613/60‑1 ATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGC < 1:1823081/60‑1 ATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGC < 1:6673765/60‑1 ATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGC < 1:6682680/60‑1 CAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAA > 1:5987747/1‑60 AGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCA < 1:6347106/71‑1 AGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCA > 1:1333907/1‑50 GCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCA < 1:7872892/39‑1 GCACCAAACCATTTTTCGG‑AAGGGCTTGCAGAGTGCCA < 1:3545617/38‑1 CACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCG < 1:4960626/54‑1 CACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCG < 1:1111707/54‑1 CACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTT < 1:7091340/43‑1 CACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTT < 1:6490081/43‑1 AAATGCAAAAAGATGGCACTCTGCAAGCCCTTTCCGAAAAATGGTTTGGTGCTGATGTGACCAAATAATCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2001789‑2001716‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagcaCCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTTTGCATTTCCGCAATTGCATCATTCA > AP009048/2001741‑2001807 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |