| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2001716 = | 73 (0.900) | 7 (0.100) | 3/84 | NT | 10.3% | intergenic (‑99/+6) | yedO/fliY | D‑cysteine desulfhydrase, PLP‑dependent/cystine transporter subunit |
| ? | AP009048 | 2001741 = | 60 (0.860) | coding (782/801 nt) | fliY | cystine transporter subunit | |||||
Only 100 of 105 total aligned reads displayed.
CTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTT > AP009048/2001649‑2001782 | tgaatgatgcaattgcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCt < 1:6347106‑M1/4‑1 (MQ=255) atgatgcaattgcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGat > 1:7379559‑M1/65‑71 (MQ=255) atGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTT‑TCATTATGCTGattat < 1:4133223/70‑1 (MQ=255) tGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:5706864/71‑1 (MQ=255) tGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:529811/71‑1 (MQ=255) tGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:520363/71‑1 (MQ=255) tGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:2415578/71‑1 (MQ=255) aCGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTgg < 1:3258152/71‑1 (MQ=255) ttgcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTg > 1:5987747‑M1/56‑60 (MQ=255) gCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTgtt < 1:453711/70‑3 (MQ=255) gcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGat < 1:6673765‑M1/7‑1 (MQ=255) gcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGat < 1:6682680‑M1/7‑1 (MQ=255) gcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGat < 1:1823081‑M1/7‑1 (MQ=255) gcggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGat < 1:2254613‑M1/7‑1 (MQ=255) cggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTg < 1:1111707‑M1/2‑1 (MQ=255) cggaaatgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTg < 1:4960626‑M1/2‑1 (MQ=255) ccgcgTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAg < 1:4547721/70‑1 (MQ=255) aCGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAg > 1:3274792/1‑71 (MQ=255) atgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCTGATTATTTGGTCACATCAGc > 1:254423‑M1/48‑71 (MQ=255) tgcaaaaagatggcactctgcaagccctttccgaaaaatggtttggTGCt > 1:1333907‑M1/47‑50 (MQ=255) taaataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCa < 1:4335442/71‑1 (MQ=255) aaataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCa > 1:6719734/1‑70 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGc < 1:6329658/44‑1 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGc < 1:2486193/65‑1 (MQ=255) aataaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaaa > 1:6054855/1‑71 (MQ=255) aaagatggcactctgcaagccctttccgaaaaatggtttggTg < 1:7091340‑M1/2‑1 (MQ=255) aaagatggcactctgcaagccctttccgaaaaatggtttggTg < 1:6490081‑M1/2‑1 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAcc < 1:6368323/71‑1 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAcc < 1:2386972/71‑1 (MQ=255) taaaAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAAc > 1:7448259/1‑70 (MQ=255) aaaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaaa > 1:4875711/1‑68 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAt > 1:2916081/1‑71 (MQ=255) aaaaaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAt > 1:2729223/1‑71 (MQ=255) tggcactctgcaagccctttccgaaaaatggtttggTGc < 1:7872892‑M1/3‑1 (MQ=255) tggcactctgcaagcccttccgaaaaatggtttggTGc < 1:3545617‑M1/3‑1 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGc > 1:1881737/1‑58 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGc > 1:4012161/1‑58 (MQ=255) aaGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt > 1:4121082/1‑71 (MQ=255) gcTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGc < 1:6881475/53‑1 (MQ=255) gcTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGa < 1:2803295/71‑1 (MQ=255) cTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGat > 1:4465479/1‑35 (MQ=255) cTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGat > 1:5239979/1‑35 (MQ=255) tAGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:3251445/38‑1 (MQ=255) tAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGa > 1:7844282/1‑69 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGattatt < 1:3806772/37‑1 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAg < 1:355515/49‑1 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAg < 1:1998261/49‑1 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg > 1:1334523/1‑71 (MQ=255) aGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg > 1:5032008/1‑71 (MQ=255) gTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTca > 1:7012100/1‑42 (MQ=255) gTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAgg < 1:4540114/71‑1 (MQ=255) tGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTcaca < 1:1730423/43‑1 (MQ=255) tGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATc < 1:4508532/45‑1 (MQ=255) tGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCa < 1:5225396/46‑1 (MQ=255) gAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttttt > 1:3261093/1‑61 (MQ=255) aaaGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAg > 1:6231155/1‑45 (MQ=255) ctttccgaaaaatggtttggTGCTGATTATTTGGTc > 1:5219453‑M1/21‑36 (MQ=255) ctttccgaaaaatggtttggTGCTGATTATTTGGTc > 1:7524283‑M1/21‑36 (MQ=255) ctttccgaaaaatggtttggTGCTGATTATTTGGTc > 1:7834631‑M1/21‑36 (MQ=255) ctttccgaaaaatggtttggTGCTGATTATTTGGTc > 1:4667971‑M1/21‑36 (MQ=255) aGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTg < 1:1514750/71‑1 (MQ=255) ttccgaaaaatggtttggTGCTGATTATTTGGTcac < 1:2817314‑M1/18‑1 (MQ=255) ttccgaaaaatggtttggTGCTGATTATTTGGTcac < 1:5653752‑M1/18‑1 (MQ=255) gcCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCaa < 1:7367263/46‑1 (MQ=255) ctttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAg < 1:4536300/58‑1 (MQ=255) ccTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 1:5315467/55‑1 (MQ=255) cTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:6778816/1‑54 (MQ=255) cTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCa < 1:304756/67‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt < 1:5207619/50‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtttt < 1:6690591/50‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCAtt < 1:5519778/48‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:365637/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:6833534/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg > 1:3400792/1‑53 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCg < 1:4964455/53‑1 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTg > 1:7549575/1‑71 (MQ=255) ttttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTg > 1:4808518/1‑71 (MQ=255) tttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:5684264/1‑71 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGc > 1:6430501/1‑35 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCaa > 1:1417832/1‑40 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGc < 1:4745846/59‑1 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:5463038/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:5453650/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:473553/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:2028641/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCagag > 1:2198539/1‑67 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:579576/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:1002193/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:2841792/1‑66 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:6648273/1‑70 (MQ=255) ttttGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGc > 1:7227630/1‑70 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCAttt < 1:1229622/41‑1 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGaaa > 1:7886409/1‑49 (MQ=255) cATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGaaa > 1:2441476/1‑49 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCtttt > 1:3445965/1‑71 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:4515373/70‑1 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:2187860/70‑1 (MQ=255) aTTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCttt < 1:6501744/70‑1 (MQ=255) ttATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCa < 1:451703/56‑1 (MQ=255) tATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCaga > 1:5672588/1‑57 (MQ=255) | CTTATTATGCACGCTGAAAACGCGTAAATAAAAAAGGCGCTAGTGAAAGCGCCCTTTTTTGTCATTATGCTGATTATTTGGTCACATCAGCACCAAACCATTTTTCGGAAAGGGCTTGCAGAGTGCCATCTTTT > AP009048/2001649‑2001782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |