| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2155855 = | 81 (0.990) | 15 (0.210) | 5/84 | NT | 18.5% | intergenic (‑590/‑298) | yegL/mdtA | conserved hypothetical protein/multidrug efflux system, subunit A |
| ? | AP009048 | 2155875 = | 63 (0.900) | intergenic (‑610/‑278) | yegL/mdtA | conserved hypothetical protein/multidrug efflux system, subunit A | |||||
ACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGCTACTCATCA‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2155929‑2155855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatca‑‑‑tGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTC > AP009048/2155875‑2155944 cCGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTAATGATGAAGCTACTCA > 1:2870265/2‑71 CGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGCTACTCAT < 1:6423644/71‑1 TGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGCTACTCATCA‑‑‑T > 1:7532957/1‑71 AAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGCTACTCATCA‑‑‑T < 1:6259333/69‑1 ATGATGAAGCTACTCATCATCGTGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTT > 1:7939094/1‑71 ATGATGAAGCTACTCATCATCGTGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTT > 1:187532/1‑71 ATGATGAAGCTACTCATCATCGTGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTT > 1:6837280/1‑71 ATGATGAAGCTACTCATCATCGTGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTT < 1:3877172/71‑1 ATGATGAAGCTACTCATCATCGTGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTT > 1:3742658/1‑64 ATGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCC < 1:4112948/42‑1 ATGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCC < 1:2997094/42‑1 ATGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCC < 1:6395127/42‑1 ATGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCC < 1:6389568/42‑1 ATGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCC < 1:5390580/42‑1 TGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGG > 1:2878019/1‑56 TGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGG > 1:5527224/1‑56 TGATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGG > 1:4847802/1‑56 GATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGG > 1:5351889/1‑54 GATGAAGCTACTCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGG > 1:4017562/1‑54 TCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGA > 1:3600271/1‑41 TCATCA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGA > 1:7125343/1‑41 CA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGG < 1:3618537/35‑1 CA‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGG < 1:7371161/35‑1 A‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGT > 1:6252741/1‑71 A‑‑‑TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGT < 1:764558/71‑1 TGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTC < 1:5100592/71‑1 ACGCTGAAACGGGAAAGCCCCTCCCGAGGAAGGGGCCATAAATAAGGAAAGGGTCATGATGAAGCTACTCATCA‑‑‑T‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2155929‑2155855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatca‑‑‑tGACCCTTTCCTTATTTATGGCCCCTTCCTCGGGAGGGGCTTTCCCGTTTCAGCGTCCCGCTGAAATCGTC > AP009048/2155875‑2155944 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |