New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 2173565NA (NA)83 (1.020) 49/98 NT 100% pseudogene (306/2041 nt)
pseudogene (306/339 nt)
gatR
gatR
DNA‑binding transcriptional regulator; ECK2083:JW5340+JW2074:b4498
DNA‑binding transcriptional regulator, C‑ter fragment; ECK2083:JW2074:b2090
?AP009048 = 3932931 0 (0.000)coding (222/1608 nt) dppA dipeptide transporter

AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2173507‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  <  AP009048/3932931‑3932862
                                                                                                                                 
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            <  1:3101104/71‑1
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            >  1:3249305/1‑71
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            <  1:2778644/71‑1
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            >  1:3174590/1‑71
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGT                                                            >  1:4562585/1‑71
  CAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGC                                                          >  1:7566200/1‑71
      TTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTG                                                              >  1:7480933/1‑63
       TGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGAT                                                      <  1:6422723/70‑1
        GAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    >  1:2938003/1‑71
        GAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     <  1:5900576/70‑1
         AAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    >  1:4907999/1‑70
          AAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA                                                  <  1:1999206/71‑1
           AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA                                                 <  1:2302801/71‑1
           AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA                                                 <  1:3856452/71‑1
           AACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAA                                                 <  1:2933636/71‑1
            ACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA                                                >  1:582519/1‑71
             CAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGT                                                               >  1:26698/1‑55
              AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT                                              <  1:7227731/71‑1
              AAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATT                                              <  1:7399256/71‑1
               AGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             <  1:7760029/71‑1
                GAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTC                                             >  1:4164839/1‑70
                  ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC                                          <  1:7023446/71‑1
                  ACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGG                                                             >  1:4077667/1‑52
                    CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA                                        <  1:7623913/71‑1
                    CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC                                          >  1:1144525/1‑69
                    CTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCC                                                         <  1:178869/54‑1
                     TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCA                                        >  1:6662026/1‑70
                     TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:2047667/1‑57
                     TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:1994723/1‑57
                     TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:1668014/1‑57
                     TCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATT                                                     >  1:4938065/1‑57
                      CGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAA                                           >  1:5620341/1‑66
                       GCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                      <  1:6999456/70‑1
                        CTTAGGCCTGTGTCCTTATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAAT                                               <  1:5559099/60‑1
                        CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGa                                                               >  1:1599437/1‑43
                        CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       >  1:4137114/1‑52
                        CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       >  1:3930494/1‑52
                        CTTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       >  1:6926076/1‑52
                         TTAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGG                                   >  1:2229583/1‑71
                          TAGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGT                                  >  1:4278751/1‑71
                           AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGT                                  >  1:3629520/1‑70
                           AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGT                                  >  1:5381125/1‑70
                           AGGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCA                                            >  1:2810375/1‑60
                            GGCCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTA                                <  1:6383266/71‑1
                              CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTAT                               >  1:7800323/1‑70
                              CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    <  1:740336/49‑1
                              CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    <  1:4412672/49‑1
                              CCTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTT                                                    <  1:2778295/49‑1
                               CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA                             <  1:2897835/71‑1
                               CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATA                              >  1:6030459/1‑70
                               CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATA                              >  1:2189319/1‑70
                               CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTAT                               >  1:6218933/1‑69
                               CTGTGTCCATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTAT                               >  1:7865912/1‑69
                                      CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA                      >  1:6114079/1‑71
                                      CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA                      >  1:7290746/1‑71
                                      CATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA                      >  1:2094378/1‑71
                                       ATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                      <  1:859384/54‑1
                                       ATATTACGTGGGTAGGATCACACTTCGGTGGTGCCGA                                                       <  1:2269235/37‑1
                                        TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG                    <  1:5407357/71‑1
                                        TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGA                      >  1:4875009/1‑69
                                        TATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGG                        <  1:4683148/67‑1
                                         ATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACG                    >  1:5818853/1‑70
                                         ATTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA                                                >  1:5125788/1‑42
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGA                  <  1:6409661/71‑1
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   >  1:5186788/1‑70
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   <  1:7801379/70‑1
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   >  1:7491076/1‑70
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   <  1:4591735/70‑1
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA                                                >  1:2949647/1‑41
                                          TTACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAA                                                >  1:4706619/1‑41
                                           TACGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                      >  1:2015444/1‑50
                                             CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA                 <  1:4167140/69‑1
                                             CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA                                                  <  1:3042055/36‑1
                                             CGTGGGTAGGATCACACTTCGGTGGTGCCGATTTTA                                                  <  1:816439/36‑1
                                              GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAG              <  1:3914268/71‑1
                                              GTGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAG              <  1:4261764/71‑1
                                               TGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACC                                         >  1:1200500/1‑43
                                               TGGGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACC                                         >  1:7280578/1‑43
                                                 GGTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGG                   <  1:4650905/63‑1
                                                  GTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGT          >  1:898449/1‑71
                                                  GTAGGATCACACTTCGGTGGTGCCGATTTTAAATTCAAC                                          <  1:7744713/39‑1
                                                    AGGATCACACTTCGGTGGTGCCGATTTTAAATTCAACC‑‑ACGGTTATAAAGCGGGACGGAAG                <  1:7149495/61‑1
                                                     GGATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCAT       <  1:7194707/71‑1
                                                      GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATA      <  1:1394914/71‑1
                                                      GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                      >  1:7480102/1‑39
                                                      GATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGA                                      >  1:2981067/1‑39
                                                       ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG     <  1:3602714/71‑1
                                                       ATCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAA                             >  1:6155342/1‑47
                                                        TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG     <  1:5673007/70‑1
                                                        TCACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAG     <  1:5149239/70‑1
                                                         CACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAA                 <  1:2999945/57‑1
                                                          ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  >  1:877224/1‑71
                                                          ACACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGC            <  1:4307272/61‑1
                                                                                                                                 
AACAATTTGAAAACAAGAACCTCGCTTAGGCCTGTGTCCATATTACGTGGGTAGGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2173507‑2173565
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CACTTCGGTGGTGCCGATTTTAAATTCAACCAGACGGTTATAAAGCGGGACGGAAGAGGCGTCATAGGTG  <  AP009048/3932931‑3932862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.