| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2412225 | NA (NA) | 105 (1.290) | 48/98 | NT | 93.8% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 7 (0.090) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 139 total aligned reads displayed.
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2412157‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG < AP009048/3748805‑3748737 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:296726/70‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT > 1:2364636/1‑71 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG < 1:6590325/70‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG < 1:5107749/70‑1 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTG < 1:4572522/70‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT < 1:1044231/71‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT > 1:1259671/1‑71 AAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:6010422/71‑1 AGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG < 1:7323656/70‑1 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATTAGTAAGTTGGCAGCATCACCTGT > 1:6544715/1‑63 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG > 1:3413121/1‑69 GCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:4001076/1‑61 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAG > 1:7910870/1‑70 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCATCATCACCT < 1:3430232/57‑1 CTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:2430871/57‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:6900990/1‑71 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:3373202/1‑71 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAG > 1:452154/1‑64 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATT > 1:7520101/1‑71 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAAT < 1:1514188/70‑1 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:6232794/54‑1 GAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:1803820/54‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:3956928/71‑1 AGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:6916985/71‑1 GCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:174872/71‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:3170412/70‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:6691341/1‑50 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT < 1:1155428/50‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:3136787/1‑50 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:6847867/71‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT < 1:2488239/54‑1 CTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT < 1:1746744/54‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:7439128/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:1927212/65‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTT < 1:794096/65‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:446847/1‑71 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA < 1:2563012/67‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTT > 1:5869381/1‑49 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:4865598/1‑71 AAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGT < 1:1723926/47‑1 AAAACACCATCATACACTATATCAGTAAGTTGGCAGCATCACCTGT < 1:4158012/46‑1 AACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT > 1:3143560/1‑42 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC < 1:5583825/71‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC < 1:2055022/71‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC < 1:947198/66‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGC < 1:278134/51‑1 CCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCC > 1:7647562/1‑66 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA > 1:7394079/1‑57 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAA > 1:1951209/1‑52 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAACCAAATTTAAATTATCCCGTCGG > 1:6684123/1‑70 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATT < 1:3245861/42‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:4772967/1‑71 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTTAT < 1:5089258/40‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTGTAATTAGAAGCAAATTTAAATT > 1:3560289/1‑58 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:608754/51‑1 TACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:5037980/51‑1 ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTAT > 1:6517919/1‑56 ACACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTA < 1:4512662/55‑1 aACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:1443967/2‑51 CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT < 1:7755237/52‑1 CACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAAT < 1:5598608/52‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTT < 1:730045/71‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAA < 1:7072990/49‑1 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAA > 1:4138999/1‑43 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:7761682/1‑42 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:5400947/1‑42 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:582701/1‑42 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:176637/1‑42 ACTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCA > 1:3584341/1‑42 CTAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTT > 1:835604/1‑70 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAATT > 1:139678/1‑68 TAAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCT < 1:2348214/62‑1 AAATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTC > 1:6302088/1‑62 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:7845123/1‑70 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:1868346/1‑70 AATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA < 1:5263373/69‑1 ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGG > 1:1023514/1‑57 ATCAGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGG > 1:1687351/1‑57 AGTAAGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATT < 1:4599739/44‑1 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCAC > 1:7017625/1‑71 AGTTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAA > 1:801799/1‑38 GTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:6914405/35‑1 GTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:3537413/35‑1 GTTGGCAGCATCACCTGTTATTAGAAGCAAATTTA < 1:2716142/35‑1 TTGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:6792365/1‑41 TGGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA > 1:5755494/1‑70 GGCAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCA > 1:6113356/1‑69 CAGCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGA < 1:1217455/71‑1 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACC > 1:1314288/1‑64 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC > 1:4084989/1‑40 GCATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTC > 1:5791202/1‑40 GCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:959266/1‑35 GCATCACCTGTTATTAGAAGCAAATTTAAATTATC > 1:2524796/1‑35 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:2262953/1‑70 CATCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATT > 1:1073233/1‑70 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAAC > 1:3364441/1‑52 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAAC > 1:1464728/1‑52 TCACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTA > 1:6299428/1‑50 ACCTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAA > 1:5527209/1‑49 CTGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACC < 1:7142319/51‑1 GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2412157‑2412225‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTATTAGAAGCAAATTTAAATTATCCCGTCGGCTCCAGTTTTAACACCATCACCAAAGATTTAATCG < AP009048/3748805‑3748737 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |