| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2412225 | NA (NA) | 105 (1.290) | 48/98 | NT | 93.8% | intergenic (‑55/‑782) | insA/yfbQ | IS1 element protein/predicted aminotransferase |
| ? | AP009048 | = 3748805 | 7 (0.090) | coding (176/984 nt) | tnaB | tryptophan transporter of low affinity | |||||
Only 100 of 118 total aligned reads displayed.
GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > AP009048/2412157‑2412295 | gAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa < 1:1743442/70‑1 (MQ=31) aaaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaa > 1:3494023/1‑70 (MQ=33) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:2717945/71‑1 (MQ=35) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa > 1:6051966/1‑70 (MQ=35) aaCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa > 1:5516963/1‑70 (MQ=35) aCAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaa < 1:3474474/71‑1 (MQ=38) cAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa < 1:6833056/71‑1 (MQ=39) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:2822070/62‑1 (MQ=35) ccACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaa < 1:5584910/62‑1 (MQ=35) cACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCa < 1:1413868/59‑1 (MQ=31) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:740086/63‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:3203462/63‑1 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:3221816/1‑71 (MQ=255) tGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:3786154/1‑71 (MQ=255) ggAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt > 1:1488745/1‑71 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaa < 1:6569309/57‑1 (MQ=38) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca > 1:2400549/1‑69 (MQ=255) gAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTcaca < 1:2789386/69‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCaaaaaa < 1:3694554/57‑1 (MQ=255) gCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGt > 1:3055636/1‑71 (MQ=255) cACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt < 1:6957720/71‑1 (MQ=255) aCCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt < 1:7930786/70‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGtt < 1:2127607/69‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:754454/1‑71 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc < 1:1698924/71‑1 (MQ=255) ccTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTc > 1:6705045/1‑70 (MQ=255) ccTCAAAAACACCATCATAAACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTc > 1:6507513/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGAAAAAGCGACTCACATTGTTCCGt > 1:3074336/1‑70 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTcc > 1:4150752/1‑68 (MQ=255) cAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGt > 1:6290635/1‑70 (MQ=255) aaaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:2526460/1‑71 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:4483721/1‑70 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta > 1:4474373/1‑70 (MQ=255) aaaaCACCATCATACACTAAATCAGTAAGTAGGCAGCATCACCAAAAAAGCGACTCACATTGATCCGtt > 1:674818/1‑69 (MQ=255) aaaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTtat > 1:208011/1‑70 (MQ=255) aaCACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAg > 1:6623523/1‑48 (MQ=255) acacCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAAt < 1:4642607/71‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:7522070/56‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:2903045/56‑1 (MQ=255) acCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGc > 1:6837427/1‑71 (MQ=255) ccATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc > 1:4141362/1‑71 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAACAGCGACTCACATTGTTcc < 1:4966881/59‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:6619030/44‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGc < 1:595735/44‑1 (MQ=255) catcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCt < 1:2676774/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGa > 1:5635408/1‑44 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCt > 1:1014904/1‑69 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:2111557/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:7570710/71‑1 (MQ=255) tcatACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGa < 1:5916626/71‑1 (MQ=255) catACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCg < 1:1895432/57‑1 (MQ=255) atACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg > 1:308676/1‑41 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1353911/1‑68 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:5778093/1‑68 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:4312730/1‑68 (MQ=255) cacTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:4896130/1‑68 (MQ=255) acTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGcc < 1:7473036/62‑1 (MQ=255) cTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCg < 1:5041035/36‑1 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGAc > 1:6328408/1‑37 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGAc > 1:5244505/1‑37 (MQ=255) tAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGaa > 1:4645176/1‑64 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:7130123/1‑69 (MQ=255) aaaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt > 1:6721511/1‑69 (MQ=255) aaTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAt < 1:3800705/41‑1 (MQ=255) aTCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATcaca < 1:7097327/71‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt < 1:5961490/48‑1 (MQ=255) tCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGtt < 1:4602760/48‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACAtt < 1:6045382/38‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa < 1:3241241/71‑1 (MQ=255) aGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGa < 1:1605243/70‑1 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:820278/1‑70 (MQ=255) gTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAat < 1:7180591/71‑1 (MQ=255) aaGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAata > 1:3951120/1‑70 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:7527034/1‑71 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatata > 1:7737060/1‑71 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:6825875/70‑1 (MQ=255) aGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:7044391/70‑1 (MQ=255) gTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:6305256/51‑1 (MQ=255) gTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:3738682/51‑1 (MQ=255) tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTta < 1:6843323/40‑1 (MQ=255) tGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGaa > 1:3445754/1‑64 (MQ=255) ggCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg > 1:3398994/1‑48 (MQ=255) gcagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt < 1:3141177/70‑1 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGtt > 1:4740231/1‑36 (MQ=255) cagcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCtt > 1:4108872/1‑69 (MQ=255) agcaTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAg > 1:3742623/1‑71 (MQ=255) caTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAggg < 1:5050386/71‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:2912531/45‑1 (MQ=255) aTCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:7912628/71‑1 (MQ=255) cACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATc > 1:2492686/1‑71 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTg < 1:6844554/39‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAatat < 1:5502644/57‑1 (MQ=255) aCCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCg < 1:3919638/71‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:2476145/1‑40 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg < 1:7878094/40‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAg > 1:1526995/1‑40 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGAt < 1:5409162/45‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGa < 1:643055/66‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa < 1:1460782/71‑1 (MQ=255) cAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCa < 1:830732/71‑1 (MQ=255) | GAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCAAAAAAGCGACTCACATTGTTCCGTTATAATGCCTGAAGTAGATCACAGAATATATCTTCAGGGATCGCA > AP009048/2412157‑2412295 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |