| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2433809 | 41 (0.500) | 4 (0.050) | 3/88 | NT | 7.9% | coding (264/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| ? | AP009048 | = 2433820 | 57 (0.780) | coding (253/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase | |||||
TCAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2433736‑2433809‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGATGGCTTACTGACCCGTGC < AP009048/2433820‑2433753 TCAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTT < 1:5041775/70‑1TCAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTT < 1:1164340/70‑1TCAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTT > 1:2231335/1‑70 CAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTT < 1:6764892/69‑1 AGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGAT > 1:3471443/1‑71 GCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGTACAATGCCGGAAAGGGTTTTGATT < 1:2720320/71‑1 GCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGA < 1:2644680/69‑1 GTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTT < 1:1455633/47‑1 TCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGAT < 1:3763529/49‑1 GTAAGGCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTTTACCCTGTTCAATCAAAA > 1:4100446/1‑66 GTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTTTACCCTGTTCAATCAAAA > 1:5636429/1‑66 CCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGA < 1:2746866/40‑1 CCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGA < 1:3334229/40‑1 CATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTTTACCCTGTTCAATCAAAA > 1:2035242/1‑60 CAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGAT > 1:6218937/1‑37 TATAGCTATGGACAATGCCGGAAAGGGTTTTGATTTTACCCTGTTC < 1:4128583/46‑1 TGATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGA > 1:5591410/1‑55 TGATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACT < 1:3553285/53‑1 GATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGA > 1:5857697/1‑54 ATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGATGGCTTACTGACCCGTGC < 1:4007938/71‑1 ATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGATGGCTTACTGACCCGTGC < 1:1879348/71‑1 ATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGATGGCTTACTGACCCGTGC < 1:1538156/71‑1 ATTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTC < 1:3259524/39‑1 TTTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACT < 1:7287448/50‑1 TCAGCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2433736‑2433809‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgattTTACCCTGTTCAATCAAAACCCTTTCCGGCATTGTCCATAGCTATACTGATGGCTTACTGACCCGTGC < AP009048/2433820‑2433753 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |