| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2433809 | 41 (0.500) | 4 (0.050) | 3/88 | NT | 7.9% | coding (264/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase |
| ? | AP009048 | = 2433820 | 57 (0.780) | coding (253/570 nt) | ubiX | 3‑octaprenyl‑4‑hydroxybenzoate carboxy‑lyase | |||||
GCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATCGCGCG > AP009048/2433739‑2433879 | gCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGTACAATGCCGGAAAGGGTTTTGATT < 1:2720320‑M1/71‑1 (MQ=255) accacATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTttgattga < 1:2422580/71‑1 (MQ=255) cacaTCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGaa > 1:1203531/1‑70 (MQ=255) cGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAgg > 1:2891102/1‑65 (MQ=255) gCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAggg > 1:4694250/1‑65 (MQ=255) gCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaat < 1:4007938‑M2/71‑4 (MQ=255) gCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaat < 1:1879348‑M2/71‑4 (MQ=255) gCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaat < 1:1538156‑M2/71‑4 (MQ=255) ggTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCa < 1:7157466/71‑1 (MQ=255) ggTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCa < 1:4056689/71‑1 (MQ=255) tCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCAc < 1:5689053/67‑1 (MQ=255) cAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTttgattga > 1:6100681/1‑51 (MQ=255) cAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTttgattga > 1:7168014/1‑51 (MQ=255) cAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTttgattga > 1:2872431/1‑51 (MQ=255) cAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATcc > 1:2884164/1‑71 (MQ=255) aGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAAc > 1:5941034/1‑52 (MQ=255) gTAAGGCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTttaccctgttcaatcaaaa > 1:4100446‑M1/1‑47 (MQ=255) gTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTttaccctgttcaatcaaaa > 1:5636429‑M1/1‑47 (MQ=255) aGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAggg > 1:926123/1‑52 (MQ=255) aGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCAcc < 1:935298/62‑1 (MQ=255) aGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCAcc < 1:2095643/62‑1 (MQ=255) ccATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCAt > 1:2252118/1‑62 (MQ=255) cATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTttaccctgttcaatcaaaa > 1:2035242‑M1/1‑41 (MQ=255) tCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaatca > 1:5591410‑M2/1‑50 (MQ=255) tCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaatc > 1:5857697‑M2/1‑50 (MQ=255) cAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTg > 1:3246539/1‑70 (MQ=255) aGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaatca < 1:3553285‑M2/53‑6 (MQ=255) aGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaa < 1:7287448‑M2/50‑3 (MQ=255) aGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTg > 1:4109794/1‑69 (MQ=255) tataGCTATGGACAATGCCGGAAAGGGTTTTGATTttaccctgttc < 1:4128583‑M1/46‑12 (MQ=255) ataGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGa > 1:4343160/1‑68 (MQ=255) taGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAg > 1:4915163/1‑59 (MQ=255) taGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAg > 1:7080973/1‑59 (MQ=255) taGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAg < 1:4741353/70‑1 (MQ=255) taGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAg < 1:3676912/70‑1 (MQ=255) taGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAg < 1:3117824/70‑1 (MQ=255) gCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGaa < 1:4874603/70‑1 (MQ=255) tGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCgg < 1:3218669/70‑1 (MQ=255) gACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAaat < 1:3259524‑M2/39‑4 (MQ=255) gACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTg > 1:324877/1‑57 (MQ=255) gACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGaa < 1:845752/70‑1 (MQ=255) gACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAag < 1:5615875/71‑1 (MQ=255) gACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAag < 1:1937237/71‑1 (MQ=255) aCAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGt < 1:1533117/53‑1 (MQ=255) aCAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGaa < 1:7731379/69‑1 (MQ=255) cAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAagag < 1:7568634/71‑1 (MQ=255) aaTGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGaa > 1:5575262/1‑67 (MQ=255) aaTGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGaa > 1:5756345/1‑67 (MQ=255) aTGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAAcc < 1:5619885/62‑1 (MQ=255) aTGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGAt < 1:4441291/71‑1 (MQ=255) aaaGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTggcg < 1:3922204/71‑1 (MQ=255) gggTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAag < 1:472151/57‑1 (MQ=255) gggTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTggcggc > 1:7562382/1‑70 (MQ=255) gggTTTTGATTGAACAGGGTAAAATCACCATCCACAGCGTCTGGAAAGAACCGGAAGAGATGCTggcggaa < 1:915870/71‑3 (MQ=255) ggTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCa > 1:3399554/1‑70 (MQ=255) gTTTTGATTGAACAGGGTAAAATCACCATCCACAGCGTCTGGaa < 1:2062637/44‑1 (MQ=255) ttttGATTGAACAGGGTAAaatcaaaaccctttccggcattgtccatagctatactgatggcttac > 1:5636429‑M2/1‑19 (MQ=255) ttttGATTGAACAGGGTAAaatcaaaaccctttccggcattgtccatagctatactgatgccttac > 1:4100446‑M2/1‑19 (MQ=255) ttttGATTGAACAGGGTAAaatcaaaaccctttccggcattgtccatagctatactgatg > 1:2035242‑M2/1‑19 (MQ=255) ttttGATTGAACAGGGTAAAATCACCCTCCCCAGCGTCTGGAAAGaa < 1:7229853/47‑1 (MQ=255) ttgattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAaga > 1:329278/1‑53 (MQ=255) ttgattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTggcggc < 1:692098/65‑1 (MQ=255) ttgattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATc > 1:3720325/1‑71 (MQ=255) tgattgaACATGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcg > 1:7304192/1‑71 (MQ=255) tgattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATg > 1:93481/1‑56 (MQ=255) tgattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcg > 1:255500/1‑71 (MQ=255) tGATTttaccctgttcaatcaaaaccctttccggcattgtccatagctatactga > 1:5591410‑M1/1‑5 (MQ=255) tGATTttaccctgttcaatcaaaaccctttccggcattgtccatagctatact < 1:3553285‑M1/53‑49 (MQ=255) gattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcgc > 1:5649213/1‑71 (MQ=255) gattgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcgc > 1:6131676/1‑71 (MQ=255) gATTttaccctgttcaatcaaaaccctttccggcattgtccatagctatactga > 1:5857697‑M1/1‑4 (MQ=255) aTTttaccctgttcaatcaaaaccctttccggcattgtccatagctatactgatggcttactgacccgtgc < 1:1538156‑M1/71‑69 (MQ=255) aTTttaccctgttcaatcaaaaccctttccggcattgtccatagctatactgatggcttactgacccgtgc < 1:1879348‑M1/71‑69 (MQ=255) aTTttaccctgttcaatcaaaaccctttccggcattgtccatagctatactgatggcttactgacccgtgc < 1:4007938‑M1/71‑69 (MQ=255) aTTttaccctgttcaatcaaaaccctttccggcattgtc < 1:3259524‑M1/39‑37 (MQ=255) ttttaccctgttcaatcaaaaccctttccggcattgtccatagctatact < 1:7287448‑M1/50‑49 (MQ=255) ttgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAAc < 1:6655691/42‑1 (MQ=255) ttgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGaa > 1:341287/1‑47 (MQ=255) ttgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcgcgc > 1:4240756/1‑71 (MQ=255) ttgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcgcgc > 1:1174978/1‑71 (MQ=255) tgaACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATcgcgcg > 1:6310377/1‑71 (MQ=255) | GCACCACATCTGCCGCACGGGTCAGTAAGCCATCAGTATAGCTATGGACAATGCCGGAAAGGGTTTTGATTGAACAGGGTAAAATCACCATCCCCAGCGTCTGGAAAGAACCGGAAGAGATGCTGGCGGCAATATCGCGCG > AP009048/2433739‑2433879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |