| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2505754 = | 44 (0.540) | 7 (0.100) | 4/86 | NT | 14.3% | coding (1638/1698 nt) | ypdA | predicted sensory kinase in two‑component system with YpdB |
| ? | AP009048 | 2505780 = | 45 (0.630) | coding (1664/1698 nt) | ypdA | predicted sensory kinase in two‑component system with YpdB | |||||
CAATATCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2505829‑2505754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaCCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTT > AP009048/2505780‑2505846 CAATATCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAA < 1:4888875/71‑1 ATATCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAAC > 1:27812/1‑71 ATATCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAAC > 1:6082336/1‑71 TCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGCA < 1:3817097/71‑1 TCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGC < 1:3270450/70‑1 TCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGC > 1:6034262/1‑70 CCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAA > 1:2942694/1‑62 CCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAA > 1:5650583/1‑61 GCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAA > 1:7717325/1‑59 GCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAA > 1:5121396/1‑59 GCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAA > 1:6390951/1‑59 GCTCAAAGCAATAACGTAGCCTGTGAGGAGACTGGGGTGCGTTGGTTAGGAATGTAAAA > 1:7568314/1‑59 TAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGC < 1:3900605/46‑1 TGCGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTT < 1:6789768/58‑1 TGCGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTT < 1:1937898/58‑1 CGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGAGATA > 1:3994328/1‑71 CGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCA < 1:889675/38‑1 CGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCA < 1:5896624/38‑1 CGTTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCA < 1:3024356/38‑1 TTGGTTAGGAATGTAAAACGCACCCCAGTCGCCTCACA > 1:1982943/1‑38 AACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTG > 1:4940086/1‑71 AACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTG < 1:3967541/71‑1 ACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTTTGAAAGTCATCATTGT > 1:5359774/1‑71 CGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTT < 1:5007284/71‑1 CGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTT < 1:6813890/71‑1 GCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTT < 1:5254831/70‑1 CAATATCACTCCGGCTCAAAGCAATAACGTAGCCTGTGAGGCGACTGGGGTGCGTTGGTTAGGAATGTAAAACGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2505829‑2505754‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacgcaCCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGATATTGTGAAAGTCATCATTGTT > AP009048/2505780‑2505846 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |