| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2505754 = | 44 (0.540) | 7 (0.100) | 4/86 | NT | 14.3% | coding (1638/1698 nt) | ypdA | predicted sensory kinase in two‑component system with YpdB |
| ? | AP009048 | 2505780 = | 45 (0.630) | coding (1664/1698 nt) | ypdA | predicted sensory kinase in two‑component system with YpdB | |||||
TCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGA > AP009048/2505684‑2505824 | tCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAAtt < 1:4775234/71‑1 (MQ=255) catcatCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGc > 1:3220284/1‑71 (MQ=255) aacaatgatgactttcacaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGc < 1:5254831‑M1/3‑1 (MQ=255) aacaatgatgactttcacaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGCg < 1:6813890‑M1/4‑1 (MQ=255) aacaatgatgactttcacaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGCg < 1:5007284‑M1/4‑1 (MQ=255) tcatcGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGt > 1:2522575/1‑71 (MQ=255) acaatgatgactttcaaaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGCGt > 1:5359774‑M1/67‑71 (MQ=255) catcGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGtt > 1:6468142/1‑71 (MQ=255) caatgatgactttcacaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGCGtt > 1:4940086‑M1/66‑71 (MQ=255) caatgatgactttcacaatatcactccggctcaaagcaataacgtagcctgtgaggcgactggggTGCGtt < 1:3967541‑M1/6‑1 (MQ=255) tcGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGtttt < 1:4417876/71‑1 (MQ=255) gTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACAt < 1:5503783/71‑1 (MQ=255) gTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACAt < 1:5031034/71‑1 (MQ=255) gAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTc > 1:1940288/1‑71 (MQ=255) aaGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAAtt > 1:4414424/1‑57 (MQ=255) aaGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTcc > 1:932616/1‑71 (MQ=255) aaGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTcc > 1:676247/1‑71 (MQ=255) aGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGc > 1:1674246/1‑58 (MQ=255) aGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTcc > 1:7280718/1‑70 (MQ=255) aGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCt < 1:2727941/71‑1 (MQ=255) tATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTa > 1:4392691/1‑61 (MQ=255) aTTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAAc < 1:3176587/70‑1 (MQ=255) aTTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAAc < 1:2507517/70‑1 (MQ=255) ttGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAAcc < 1:1526048/70‑1 (MQ=255) ttGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAAcc > 1:4590285/1‑70 (MQ=255) tGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCaa > 1:5839894/1‑71 (MQ=255) tatctctccggctcaaagcaataacgtagcctgtgaggcgactggggTGCGTTTTACATTCCTAACCAACg > 1:3994328‑M1/48‑71 (MQ=255) aTGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACg > 1:2680315/1‑70 (MQ=255) gCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCAc < 1:2162856/70‑1 (MQ=255) aGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCAccc > 1:689302/1‑69 (MQ=255) ggggCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAg < 1:4751566/71‑1 (MQ=255) ggggCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAg > 1:7675283/1‑71 (MQ=255) gggCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAg < 1:3890443/70‑1 (MQ=255) gggCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGt > 1:2342616/1‑71 (MQ=255) tGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGcc > 1:5275203/1‑71 (MQ=255) gCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCt > 1:7812472/1‑71 (MQ=255) aagcaataacgtagcctgtgaggcgactggggTGCGTTTTACATTCCTAACCAACGCa < 1:6789768‑M1/26‑1 (MQ=255) aagcaataacgtagcctgtgaggcgactggggTGCGTTTTACATTCCTAACCAACGCa < 1:1937898‑M1/26‑1 (MQ=255) tatCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTcc < 1:726409/45‑1 (MQ=255) tatCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTcac < 1:3656556/71‑1 (MQ=255) tCCGCCGCCTGGAGACGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTcaca > 1:3428570/1‑70 (MQ=255) cgccgcCTGGAGCCGGGGACGGAAATTGCGTTTTACa < 1:6353329/37‑1 (MQ=255) cgccTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCa < 1:5781501/54‑1 (MQ=255) ccTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGcc < 1:1110023/58‑1 (MQ=255) tGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGcc > 1:7348728/1‑56 (MQ=255) ggAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCAcccc < 1:4531195/48‑1 (MQ=255) gAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTa < 1:6968606/69‑1 (MQ=255) gAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTa < 1:7698178/69‑1 (MQ=255) tgtgaggcgactggggTGCGTTTTACATTCCTAACCaa > 1:1982943‑M1/17‑38 (MQ=255) tgaggcgactggggTGCGTTTTACATTCCTAACCAACg < 1:889675‑M1/24‑1 (MQ=255) tgaggcgactggggTGCGTTTTACATTCCTAACCAACg < 1:5896624‑M1/24‑1 (MQ=255) tgaggcgactggggTGCGTTTTACATTCCTAACCAACg < 1:3024356‑M1/24‑1 (MQ=255) cGGGGACGGAAATTGCGTTTTACATTCCTAACCaa < 1:54055/35‑1 (MQ=255) ggggACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAgg < 1:5320937/56‑1 (MQ=255) ggggACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAgg < 1:5084310/56‑1 (MQ=255) gggACGGAAATTGCGTTTTACATTCCTAACCAACg > 1:6876376/1‑35 (MQ=255) ggACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCt > 1:981955/1‑56 (MQ=255) gACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTAc > 1:5441348/1‑57 (MQ=255) aCGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTa > 1:1533416/1‑60 (MQ=255) aCGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTa > 1:7486789/1‑60 (MQ=255) cGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGcc < 1:7130486/71‑1 (MQ=255) cGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGcc > 1:7140075/1‑71 (MQ=255) gAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCgg < 1:4632298/71‑1 (MQ=255) gAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCg > 1:3769841/1‑70 (MQ=255) aaaTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGc > 1:3200926/1‑60 (MQ=255) aaTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAg > 1:4834010/1‑65 (MQ=255) aaTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAg > 1:1110261/1‑71 (MQ=255) aaTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAg > 1:5508458/1‑71 (MQ=255) aaTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAg < 1:7694200/71‑1 (MQ=255) aTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAgg > 1:2696611/1‑46 (MQ=255) aTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGt > 1:4552261/1‑71 (MQ=255) aTTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGt > 1:7911123/1‑71 (MQ=255) aTTGCGTTATACATTCCTAACCAACGCACCCCAGTCGCCTCACAgg > 1:7125936/1‑46 (MQ=255) ttGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTc < 1:7029436/40‑1 (MQ=255) ttGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGt > 1:1346648/1‑70 (MQ=255) TGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGa < 1:3817097‑M1/71‑1 (MQ=255) | TCCATCATCGCGTGAAGTTATTGTATGGCGAGGGGCTGCATATCCGCCGCCTGGAGCCGGGGACGGAAATTGCGTTTTACATTCCTAACCAACGCACCCCAGTCGCCTCACAGGCTACGTTATTGCTTTGAGCCGGAGTGA > AP009048/2505684‑2505824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |