| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2518173 | 96 (1.180) | 6 (0.090) | 3/80 | NT | 7.0% | intergenic (‑21/‑315) | mntH/nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter |
| ? | AP009048 | = 2518177 | 80 (1.200) | intergenic (‑25/‑311) | mntH/nupC | manganese/divalent cation transporter/nucleoside (except guanosine) transporter | |||||
CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2518099‑2518173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacatagcAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGCGC < AP009048/2518177‑2518108 CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA < 1:1259939/71‑1CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA < 1:5135828/71‑1CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA < 1:6629106/71‑1CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:2009324/1‑71CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAA < 1:6684446/69‑1 TCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:392700/1‑69 TCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:335694/1‑69 CATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAG > 1:5916205/1‑71 CTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGCGCCTCTAA < 1:2883579/61‑1 TGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAA > 1:2098665/1‑59 CCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAA < 1:6601076/51‑1 TGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAA > 1:3614024/1‑41 TACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:387128/1‑42 TACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:5261011/1‑42 TACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACA > 1:3120187/1‑42 CTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAA > 1:4504708/1‑35 CTCAACGCGATAGTTCGTCATCTTGTCCCTCTAAAACATAG > 1:5470555/1‑41 TCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGCAAAGGCTATGT < 1:2009174/52‑1 TCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGC > 1:3456953/1‑41 GATAGTTCGTCATCTTGTGCCTCTAAAACATAGCTAAGGCTAT < 1:462766/43‑1 GATAGTTCGTCATCTTGTGCCTCTAAAACATAGCAAAGGCTAT < 1:2292261/43‑1 TAGTTCGTCATCTTGTGCCTCTAAAACATAGCAAAGGCTATGT > 1:329722/1‑43 TAGTTCGTCATCTTGTGCCTCTAAAACATAGCAAAGGCTATGT > 1:5175684/1‑43 TAGTTCGTCATCTTGTGCCTCTAAAACATAGCAAAGGCTATGT > 1:2147945/1‑43 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGG > 1:5575651/1‑71 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGG < 1:3369560/70‑1 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGG < 1:2824520/70‑1 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGG < 1:1432941/70‑1 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGG < 1:3960356/70‑1 AAACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAG < 1:6464597/63‑1 AACATAGCAAAGTCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCA < 1:3822206/61‑1 AACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGC > 1:3970309/1‑71 AACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGC > 1:6190789/1‑71 AACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCA < 1:223317/61‑1 AACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTA < 1:7761218/44‑1 AACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTA < 1:1062944/44‑1 ACATAGCAAAGGCTATGTTTTGGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCG > 1:1701390/1‑71 ACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCG < 1:1369782/71‑1 ACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCG < 1:6527865/71‑1 ACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCG < 1:1817609/71‑1 ACATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCG > 1:6325986/1‑71 CATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGG > 1:7038052/1‑71 ATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGC < 1:1278001/71‑1 ATAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGC < 1:3698224/71‑1 TAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGC < 1:1299048/70‑1 TAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGC > 1:2843235/1‑59 TAGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAG < 1:3704536/50‑1 AGCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGC > 1:4034374/1‑71 GCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAG < 1:1891435/56‑1 GCAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAG < 1:3794590/56‑1 CAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGCGC < 1:2007166/71‑1 CAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGCGC < 1:708370/71‑1 CAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGC < 1:4543258/69‑1 CAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCCGCGCG > 1:5170467/1‑70 CCTCATCTTGCGCGCCGCCCGTCCGCTGCTACTCTCAACGCGATAGTTCGTCATCTTGTGCCTCTAAAACATAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/2518099‑2518173‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacatagcAAAGGCTATGTTTTAGAGGCACAAGATGACGAACTATCGCGTTGAGAGTAGCAGCGGACGGGCGGCGCGC < AP009048/2518177‑2518108 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |