New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 258077666 (0.810)8 (0.110) 3/88 NT 10.9% coding (658/1044 nt) ypfG hypothetical protein
?AP009048 = 2580795 71 (0.970)coding (639/1044 nt) ypfG hypothetical protein

GCCTCACAGCTAATCATCATCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2580706‑2580776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatggTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCGCTG  <  AP009048/2580795‑2580726
                                                                                                                                             
GCCTCACAGCTAATCATCATCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATG                                                                         >  1:1359725/1‑70
 CCTCACAGCTAATCATCATCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATG                                                                         <  1:5185355/69‑1
                TCATCAGCGCTTTATCATCGGTCAGCGCAGTGACATTCAACTCACGACGTAAc                                                                          >  1:7137734/1‑52
                      GCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCA                                                  <  1:1706015/71‑1
                         CTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATTG                                               >  1:7848430/1‑71
                         CTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATTG                                               >  1:4553054/1‑71
                         CTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATTG                                               >  1:2069089/1‑71
                            TATCATCAGTCAGCGCAGTGACATTTACCTCACGACGCAA                                                                           >  1:219536/1‑40
                                                ACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATT                                                >  1:1327190/1‑47
                                                ACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATT                                                >  1:2945770/1‑47
                                                ACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATT                                                >  1:5254271/1‑47
                                                ACATTCACCTCACGACGCAATGGTCTGCGCTGCTCGCTTGATCCATT                                                >  1:5244915/1‑47
                                                                  AATGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGA               <  1:7166909/62‑1
                                                                   ATGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCG     <  1:1887667/71‑1
                                                                   ATGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGT                              >  1:4443175/1‑46
                                                                   ATGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGT                              >  1:5554442/1‑46
                                                                   ATGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGT                              >  1:7187543/1‑46
                                                                    TGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAAT                                >  1:4108531/1‑43
                                                                    TGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAAT                                >  1:4093953/1‑43
                                                                    TGGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGA                                       >  1:4765497/1‑36
                                                                     GGTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCGCT   >  1:2896313/1‑71
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCGCTG  <  1:657262/71‑1
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCGCTG  <  1:1796201/71‑1
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGA            <  1:5651541/61‑1
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCAC                           <  1:4637296/46‑1
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCAC                           <  1:6063445/46‑1
                                                                      GTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCAC                           <  1:3322427/46‑1
                                                                                                                                             
GCCTCACAGCTAATCATCATCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  AP009048/2580706‑2580776
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatggTCTGCGCTGCTCGCTTGATCCATTGCGTCGTGAGGTGAATGTCACTGCGCTGACTGATGATAAAGCGCTG  <  AP009048/2580795‑2580726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.