| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2580776 | 66 (0.810) | 8 (0.110) | 3/88 | NT | 10.9% | coding (658/1044 nt) | ypfG | hypothetical protein |
| ? | AP009048 | = 2580795 | 71 (0.970) | coding (639/1044 nt) | ypfG | hypothetical protein | |||||
Only 100 of 105 total aligned reads displayed.
TCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCGTCGG > AP009048/2580725‑2580860 | tcaGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGa < 1:2232840/71‑1 (MQ=255) cAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:1796201‑M2/71‑2 (MQ=255) cAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:657262‑M2/71‑2 (MQ=255) aGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAcc > 1:2896313‑M2/1‑69 (MQ=255) cgcTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAccat < 1:1887667‑M2/71‑5 (MQ=255) tttATCATAAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCa > 1:3059836/1‑71 (MQ=255) tcatcaGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:5651541‑M2/61‑2 (MQ=255) tcatcaGTCAGCGCAGTGACATTCACATCACGACGCAAAGGATCAAGCGAGCAGCGCAGACCATTCATCCg > 1:1644681/1‑71 (MQ=255) tcagtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAccatt < 1:7166909‑M2/62‑6 (MQ=255) tcagtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCa < 1:3686800/71‑1 (MQ=255) cagtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGa > 1:6145333/1‑56 (MQ=255) cagtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAg > 1:6433563/1‑71 (MQ=255) agtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGt < 1:6182363/71‑1 (MQ=255) gtcagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGt < 1:7356884/70‑1 (MQ=255) cagCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTc > 1:7667416/1‑71 (MQ=255) agCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTcc < 1:6505315/71‑1 (MQ=255) agCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTc > 1:4257238/1‑70 (MQ=255) agCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTc > 1:90652/1‑70 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATcc > 1:5485664/1‑57 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa > 1:581292/1‑71 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa > 1:2529358/1‑71 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa > 1:192429/1‑71 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa > 1:7504095/1‑71 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATa < 1:5761648/70‑1 (MQ=255) cAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATa < 1:7202410/70‑1 (MQ=255) gTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:6063445‑M2/46‑2 (MQ=255) gTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:4637296‑M2/46‑2 (MQ=255) gTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAc < 1:3322427‑M2/46‑2 (MQ=255) tGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa < 1:1215454/68‑1 (MQ=255) tGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATc > 1:4714446/1‑70 (MQ=255) aCATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAccat > 1:7187543‑M2/1‑42 (MQ=255) aCATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAccat > 1:5554442‑M2/1‑42 (MQ=255) aCATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGttt > 1:7368072/1‑60 (MQ=255) aCATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:4080559/1‑71 (MQ=255) aCATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:4338496/1‑71 (MQ=255) aTTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAcca > 1:4093953‑M2/1‑40 (MQ=255) aTTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGAcca > 1:4108531‑M2/1‑40 (MQ=255) ttCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCaa < 1:7231882/71‑1 (MQ=255) tCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCaaa > 1:5613380/1‑71 (MQ=255) cACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCg > 1:4795473/1‑48 (MQ=255) aCCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATaa > 1:4998893/1‑60 (MQ=255) ccTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCg < 1:6002084/71‑1 (MQ=255) cTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCg < 1:6472145/70‑1 (MQ=255) tCACGACGCAATGGATCAAGCGAGCAGCGCAGAcca > 1:4765497‑M2/1‑33 (MQ=255) tCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATc < 1:5997650/59‑1 (MQ=255) acgacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCaa < 1:3426061/63‑1 (MQ=255) cgacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAg > 1:2217373/1‑45 (MQ=255) cgacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAg > 1:4704458/1‑45 (MQ=255) gacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATcc < 1:6247345/56‑1 (MQ=255) gacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATcc < 1:7346343/56‑1 (MQ=255) gacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATcc < 1:3105441/56‑1 (MQ=255) gacgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCg > 1:3025569/1‑65 (MQ=255) cgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCa > 1:1414869/1‑55 (MQ=255) cgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:4194594/1‑56 (MQ=255) cgCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:4827985/1‑56 (MQ=255) cAATGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgtcactgcgctgactgatgataaag > 1:7848430‑M2/1‑25 (MQ=255) cAATGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgtcactgcgctgactgatgataaag > 1:4553054‑M2/1‑25 (MQ=255) cAATGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgtcactgcgctgactgatgataaag > 1:2069089‑M2/1‑25 (MQ=255) cAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGttct < 1:4770887/70‑1 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgt > 1:1327190‑M2/1‑24 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgt > 1:5254271‑M2/1‑24 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgt > 1:5244915‑M2/1‑24 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgt > 1:2945770‑M2/1‑24 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGACCATTCATCCg < 1:7277293/35‑1 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCaaa < 1:4853560/57‑1 (MQ=255) aaTGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGttcttc < 1:7004605/71‑1 (MQ=255) aTGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCg < 1:3513809/71‑1 (MQ=255) tGGATCAAGCGAGCAGCGCAGAccattgcgtcgtgaggtgaatgtcactgcgctgactgatgataaagcgc < 1:1706015‑M2/71‑50 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGcc > 1:6287142/1‑35 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGcc > 1:1835618/1‑35 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGttt > 1:7582195/1‑40 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGttt > 1:3494682/1‑40 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGtt > 1:7837046/1‑39 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGa < 1:2007956/71‑1 (MQ=255) tGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGa < 1:4700482/71‑1 (MQ=255) ggATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:2626281/1‑50 (MQ=255) ggATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:886117/1‑50 (MQ=255) ggATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAg > 1:6303914/1‑50 (MQ=255) gATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGt > 1:5141120/1‑71 (MQ=255) aTCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGt > 1:4802892/1‑70 (MQ=255) tCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTga < 1:1652183/71‑1 (MQ=255) tCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTga < 1:4943606/71‑1 (MQ=255) aaGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGt < 1:1196855/67‑1 (MQ=255) aaGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGt < 1:6976316/67‑1 (MQ=255) aaGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGt < 1:784780/67‑1 (MQ=255) aGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGagag < 1:5957063/71‑1 (MQ=255) agcagcGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGc < 1:1522157/71‑1 (MQ=255) agcagcGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGc > 1:864993/1‑71 (MQ=255) gcagcGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCg > 1:2056480/1‑71 (MQ=255) cagcGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCGt > 1:5677308/1‑71 (MQ=255) gcgcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCGTCg < 1:4849520/71‑1 (MQ=255) cgcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGa < 1:2904752/55‑1 (MQ=255) cgcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGa < 1:5433975/55‑1 (MQ=255) cgcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCGTCgg > 1:5982150/1‑71 (MQ=255) gcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGtt > 1:2756558/1‑48 (MQ=255) gcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGtt > 1:1243394/1‑48 (MQ=255) gcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGtt > 1:1868275/1‑48 (MQ=255) gcAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGt > 1:7572161/1‑47 (MQ=255) cAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTga < 1:5173842/57‑1 (MQ=255) cAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTga < 1:1968937/57‑1 (MQ=255) | TCAGCGCTTTATCATCAGTCAGCGCAGTGACATTCACCTCACGACGCAATGGATCAAGCGAGCAGCGCAGACCATTCATCCGCCAGTTTCCATAATCCAGCAAATCGTTGCGTTCTTCGAGTGAGAGTGGCGTCGG > AP009048/2580725‑2580860 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |