| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2926678 = | 58 (0.710) | 12 (0.180) | 5/82 | NT | 18.8% | intergenic (+350/‑207) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | 2926703 = | 55 (0.810) | intergenic (+375/‑182) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
GGAAAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2926754‑2926678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGG > AP009048/2926703‑2926772 GGAAAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATA < 1:216029/71‑1GGAAAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATA < 1:4681123/71‑1 GAAAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAG < 1:2790454/71‑1 AAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGAT < 1:3896234/71‑1 AAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGAT < 1:2957795/71‑1 AGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATT < 1:4924734/71‑1 GATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATTA < 1:2151645/71‑1 GATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATT < 1:3242048/70‑1 TACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATTAT < 1:224613/70‑1 CAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATA > 1:860252/1‑58 TGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATC < 1:6599210/70‑1 TGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATC < 1:5783019/70‑1 TTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATTA > 1:4814070/1‑39 AAATACAATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGAAAGATAC > 1:1324402/1‑63 AATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGT < 1:7070430/68‑1 AATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGT < 1:686113/68‑1 AATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGT < 1:6720123/68‑1 AATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGT < 1:5957592/68‑1 TAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATC > 1:4756180/1‑71 TAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGT > 1:3220870/1‑64 TAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGT > 1:5815562/1‑64 ATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCT < 1:5506562/70‑1 ATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCT < 1:5933379/70‑1 TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTT < 1:3490391/46‑1 TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTT < 1:3391209/46‑1 AGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTA > 1:3795223/1‑71 GATTATTGTATTTGAGATCAAGATCACTGATAGATACAT < 1:772327/39‑1 GATTATTGTATTTGAGATCAAGATCACTGATAGATACAT < 1:326764/39‑1 GATTATTGTATTTGAGATCAAGATCACGGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTAT > 1:6865719/1‑71 ATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATT < 1:2372781/71‑1 TTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATT < 1:1172171/70‑1 TATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTC > 1:6033772/1‑54 TATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTC > 1:2388843/1‑54 TATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTT > 1:7518782/1‑53 TATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTA < 1:6673330/48‑1 TATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTA < 1:2238535/48‑1 ATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTAC < 1:2217255/70‑1 ATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAAT < 1:6507832/64‑1 TTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGG > 1:4313082/1‑71 GGAAAGATACACACAAGTTATGTATCTATCAGTGATCTTGATCTCAAATACAATAATCTA‑CTTGGAAGATAGATTAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/2926754‑2926678‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tagattatTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTATCTTTCCGCCCTCAAATTATTACGG > AP009048/2926703‑2926772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |