| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 2926678 = | 58 (0.710) | 12 (0.180) | 5/82 | NT | 18.8% | intergenic (+350/‑207) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter |
| ? | AP009048 | 2926703 = | 55 (0.810) | intergenic (+375/‑182) | ygdH/sdaC | conserved hypothetical protein/predicted serine transporter | |||||
Only 100 of 104 total aligned reads displayed.
ATGTCGTTTAATGGGCAAATATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTA > AP009048/2926608‑2926747 | ccgtaataatttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaa > 1:4313082‑M1/71‑71 (MQ=255) gtaataatttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaat < 1:2217255‑M1/2‑1 (MQ=255) cGTTTAATGGGCAAATATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATaa > 1:1870275/1‑70 (MQ=255) aataatttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaataat < 1:2372781‑M1/5‑1 (MQ=255) aataatttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaataa < 1:1172171‑M1/4‑1 (MQ=255) ataatttgagggcggaaagatacacacaagttatgtatctatccgtgatcttgatctcaaatacaATAatc > 1:6865719‑M1/66‑71 (MQ=255) taatttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaATAatct > 1:3795223‑M1/65‑71 (MQ=255) atttgagggcggaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaat < 1:6507832‑M1/2‑1 (MQ=255) tGGGCAAATATTGCCCTTAAATTCTCTTTTACTTTTAATTTACAGAGTAAAGCGTTGGGATAATCTATCtt < 1:2684045/71‑1 (MQ=255) gCAAATATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCa < 1:4348351/71‑1 (MQ=255) aaTATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAg > 1:7057740/1‑70 (MQ=255) aaTATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑t < 1:2074744/71‑1 (MQ=255) gaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaata > 1:6033772‑M1/52‑54 (MQ=255) gaaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaata > 1:2388843‑M1/52‑54 (MQ=255) aaagatacacacaagttatgtatctatcagtgatcttgatctcaaatacaata > 1:7518782‑M1/51‑53 (MQ=255) agatacacacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGat < 1:5933379‑M1/22‑1 (MQ=255) agatacacacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGat < 1:5506562‑M1/22‑1 (MQ=255) gatacacacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGatta > 1:4756180‑M1/48‑71 (MQ=255) gCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCaa > 1:7114508/1‑63 (MQ=255) gCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCaa > 1:4057119/1‑63 (MQ=255) cccTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGattat < 1:6587068/71‑1 (MQ=255) tacacacaagttatgtatctatcagtgatcttgatctcaaatacaata < 1:6673330‑M1/3‑1 (MQ=255) tacacacaagttatgtatctatcagtgatcttgatctcaaatacaata < 1:2238535‑M1/3‑1 (MQ=255) cTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGatta < 1:5066044/68‑1 (MQ=255) cTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTg > 1:5985296/1‑71 (MQ=255) attAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAAACTATCTTCCAAG‑TAGattat > 1:4908214/2‑69 (MQ=255) ttAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATa < 1:4845418/46‑1 (MQ=255) ttAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTg > 1:5106029/1‑70 (MQ=255) tAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGatta < 1:350874/66‑1 (MQ=255) acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt < 1:5957592‑M1/26‑1 (MQ=255) acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt < 1:7070430‑M1/26‑1 (MQ=255) acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt < 1:6720123‑M1/26‑1 (MQ=255) acacaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGattatt < 1:686113‑M1/26‑1 (MQ=255) aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt < 1:756456/69‑1 (MQ=255) aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt < 1:2775943/69‑1 (MQ=255) aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGt < 1:5142606/69‑1 (MQ=255) aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAt > 1:3534927/1‑71 (MQ=255) aaaTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAt > 1:4957084/1‑71 (MQ=255) acaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGatta > 1:3220870‑M1/41‑64 (MQ=255) acaagttatgtatctatcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGatta > 1:5815562‑M1/41‑64 (MQ=255) aTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt < 1:644/71‑1 (MQ=255) aTTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt < 1:4551146/71‑1 (MQ=255) aagttatgtatctatcagtgatcttgatctcaaatacaATAatcta < 1:3391209‑M1/8‑1 (MQ=255) aagttatgtatctatcagtgatcttgatctcaaatacaATAatcta < 1:3490391‑M1/8‑1 (MQ=255) ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt > 1:2176903/1‑68 (MQ=255) ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt > 1:5935992/1‑68 (MQ=255) ctctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTga < 1:4537734/70‑1 (MQ=255) ctTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAttt > 1:1352948/1‑66 (MQ=255) ttttACTTTTGATTTACAGAGTAAAGCGTTGGGATAatct < 1:5548456/40‑1 (MQ=255) ttttACTTTTGATTTACAGAGTAAAGCGTTGGGATAatct < 1:77546/40‑1 (MQ=255) ttttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga < 1:1736827/69‑1 (MQ=255) ttttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagat > 1:275455/1‑70 (MQ=255) atgtatctatcagtgatcttgatctcaaatacaATAatc < 1:772327‑M1/6‑1 (MQ=255) atgtatctatcagtgatcttgatctcaaatacaATAatc < 1:326764‑M1/6‑1 (MQ=255) tttACTTTTGATTTACAGAGTAAAGCGTTGGGATAatctat > 1:2601524/1‑41 (MQ=255) ttACTTTTGATTTACAGAGTAAAGCGTTGGGATAat > 1:3932881/1‑36 (MQ=255) ttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatca < 1:5716861/70‑1 (MQ=255) ttACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc < 1:1904856/69‑1 (MQ=255) ttACTTTAGATTTACAGAGTAAAGCGTTGGGATAat > 1:2090192/1‑36 (MQ=255) gtatctttcagtgatcttgatctcaaatacaATAATCTATCTTCCAAG‑TAGATTATTGTAttt > 1:1324402‑M1/32‑63 (MQ=255) tACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑Ta > 1:6060349/1‑49 (MQ=255) tACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑Ta > 1:2243162/1‑49 (MQ=255) aCTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaag < 1:5063613/70‑1 (MQ=255) cTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagat < 1:6035736/71‑1 (MQ=255) ttttGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑Ta < 1:5755708/46‑1 (MQ=255) ttGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTTCAAG‑TAGATTATTGTAtt > 1:610142/1‑56 (MQ=255) aTTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatc < 1:3942325/66‑1 (MQ=255) tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaag < 1:4946975/60‑1 (MQ=255) tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata < 1:3341546/70‑1 (MQ=255) tACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata < 1:460857/70‑1 (MQ=255) aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaa < 1:6892611/58‑1 (MQ=255) aCAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTga > 1:4769064/1‑67 (MQ=255) cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgatagat < 1:268242/71‑1 (MQ=255) cAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgata < 1:4727225/68‑1 (MQ=255) gatctcaaatacaATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACa < 1:6599210‑M1/57‑1 (MQ=255) gatctcaaatacaATAATCTA‑CTTGGAAGATAGATTATTGTATTTGAGATCAAGATCACTGATAGATACa < 1:5783019‑M1/57‑1 (MQ=255) gTAAAGCGTTGGGATAATGTATCTTCCAAG‑TAGATTATTGTATTTGagatc < 1:6715563/51‑1 (MQ=255) gTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagat > 1:6297407/1‑50 (MQ=255) tAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTAt > 1:467060/1‑42 (MQ=255) aaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgat > 1:73620/1‑60 (MQ=255) aaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTgat > 1:3974069/1‑60 (MQ=255) aaGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAAc < 1:7642252/71‑1 (MQ=255) gCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt > 1:2765581/1‑71 (MQ=255) gCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt < 1:6874441/71‑1 (MQ=255) cGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtg < 1:6955464/71‑1 (MQ=255) gTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt < 1:3607675/69‑1 (MQ=255) gTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACtt < 1:428266/69‑1 (MQ=255) ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatca < 1:6493610/50‑1 (MQ=255) ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatca < 1:3573896/50‑1 (MQ=255) ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatcaagatca < 1:5895562/50‑1 (MQ=255) ttGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc < 1:1219293/43‑1 (MQ=255) tGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGagatc < 1:444013/42‑1 (MQ=255) tGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgtgt > 1:6668137/1‑71 (MQ=255) gggATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga > 1:1741505/1‑39 (MQ=255) gggATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga > 1:7452703/1‑39 (MQ=255) ggATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTgtgtgt < 1:6084014/71‑1 (MQ=255) gATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga > 1:1465978/1‑37 (MQ=255) gATAATCTATCTTCCAAG‑TAGATTATTGTATTTgaga > 1:1317400/1‑37 (MQ=255) gATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTtgt < 1:6172679/66‑1 (MQ=255) ATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTa < 1:224613‑M1/70‑1 (MQ=255) | ATGTCGTTTAATGGGCAAATATTGCCCTTAAATTCTCTTTTACTTTTGATTTACAGAGTAAAGCGTTGGGATAATCTATCTTCCAAG‑TAGATTATTGTATTTGAGATCAAGATCACTGATAGATACATAACTTGTGTGTA > AP009048/2926608‑2926747 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |