| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3135609 = | 106 (1.300) | 9 (0.120) | 3/90 | NT | 9.4% | coding (1570/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase |
| ? | AP009048 | 3135649 = | 77 (1.030) | coding (1530/1860 nt) | gss | fused glutathionylspermidine amidase and glutathionylspermidine synthetase | |||||
TTCTGCCGATCCTCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3135680‑3135609‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATCACCGTCCACAGCGGCT > AP009048/3135649‑3135716 TTCTGCCGATCCTCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGAT > 1:3178529/1‑71 TCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGATG > 1:1412468/1‑60 TCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGATG > 1:848849/1‑60 TCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGATG > 1:2191340/1‑60 GCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATG > 1:5009280/1‑50 CGTTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGA < 1:3434987/52‑1 CGTTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGA < 1:3444205/52‑1 CGTTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGA < 1:6114426/52‑1 CGTCACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGA < 1:318250/52‑1 TTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGACC > 1:6530028/1‑52 TTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGACC > 1:6531624/1‑52 TTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGACC > 1:1104132/1‑52 TTACCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGAC > 1:3458695/1‑51 CCTGCTGGATACCGATTTCACTGTTAATGATGGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTT > 1:2981111/1‑71 GATGGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATCACCGTCCACAGCGGC < 1:6410206/71‑1 GATGGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATCACCGTCCACAGCGGC < 1:6856627/71‑1 GATGGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATC > 1:3548279/1‑56 ATGGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATCACCGTCCACAGCGGCT < 1:7597077/71‑1 TTCTGCCGATCCTCTGGTCGCTGTTCCCGCACCATCGTTACCTGCTGGATACCGATTTCACTGTTAATGATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3135680‑3135609‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgGTGCGGGAACAGCGACCAGAGGATCGGCAGAATCGCTTTGTTGCCGGGGATCACCGTCCACAGCGGCT > AP009048/3135649‑3135716 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |