| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3191304 | 81 (0.990) | 6 (0.080) | 3/86 | NT | 7.4% | coding (441/630 nt) | yqiJ | predicted inner membrane protein |
| ? | AP009048 | = 3191322 | 80 (1.120) | coding (459/630 nt) | yqiJ | predicted inner membrane protein | |||||
TGCGCCCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3191229‑3191304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaccTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAACTA < AP009048/3191322‑3191253 TGCGCCCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAA > 1:2652051/1‑71 GCCCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTA < 1:7281504/71‑1 CCCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTAC < 1:1741408/71‑1 CCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACC < 1:7026345/71‑1 CCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTAC > 1:1161408/1‑54 TTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCTGAAGTGGCTTGATGACCGGT > 1:2492419/1‑70 AGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCTGAAGTGGCTTGATGACCGGTAATT < 1:4754594/71‑1 TATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTAC > 1:689124/1‑42 ATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAAT > 1:4353844/1‑38 ATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAAT > 1:2704800/1‑38 GTAGCATGGCGTTAATTACCTGATGTGGCTTGATGACCGGTA < 1:1810729/42‑1 GTAGCATGGCGTTAATTACCTGAAGTGGCTTGATGACCGGTA < 1:2691300/42‑1 GTAGCATGGCGTTAATTACCTGAAGTGGCTTGATGACCGGTA < 1:4505671/42‑1 GTAGCATGGCGTTAATTACCTGAAGTGGCTTGATGACCGGTA < 1:7008175/42‑1 ATTACCTGAAGTGGCTTTATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTG < 1:4492971/71‑1 ATTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTG < 1:6508205/71‑1 ATTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCT > 1:4376016/1‑70 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTC < 1:4688280/56‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTC < 1:822887/56‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTC < 1:1600101/56‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTC < 1:1442497/56‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGC < 1:4231705/35‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGC < 1:2058014/35‑1 TTACCTGAAGTGGCTTGATGACCGGTAATTAACGC < 1:1490162/35‑1 TACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTC < 1:4272286/55‑1 ACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAAC > 1:707363/1‑71 ACCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAAC > 1:7123833/1‑71 CCTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAACT < 1:5222975/71‑1 CTGAAGTGGCTTGATGACCTGTAATTAACGCCATGCTACCAATATATTCT < 1:4281473/50‑1 CTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAACTA > 1:6414944/1‑71 CTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAACTA > 1:2791756/1‑71 CTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCT < 1:7907376/50‑1 CTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTA < 1:3135033/38‑1 TGCGCCCTGGATTCCACGCGACCATAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3191229‑3191304‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑attaccTGAAGTGGCTTGATGACCGGTAATTAACGCCATGCTACCAATATATTCTTCTTCTGTAATAGCTGAACTA < AP009048/3191322‑3191253 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |