| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3191304 | 81 (0.990) | 6 (0.080) | 3/86 | NT | 7.4% | coding (441/630 nt) | yqiJ | predicted inner membrane protein |
| ? | AP009048 | = 3191322 | 80 (1.120) | coding (459/630 nt) | yqiJ | predicted inner membrane protein | |||||
Only 100 of 125 total aligned reads displayed.
TAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGAGCCTGAAG > AP009048/3191253‑3191392 | tAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAg > 1:6414944‑M2/1‑70 (MQ=255) aGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAgg < 1:5222975‑M2/71‑3 (MQ=255) gTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggt > 1:7123833‑M2/1‑68 (MQ=255) gTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggt > 1:707363‑M2/1‑68 (MQ=255) cAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaat < 1:6508205‑M2/71‑7 (MQ=255) aGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaat > 1:4376016‑M2/1‑64 (MQ=255) aTTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCa < 1:4752589/60‑1 (MQ=255) aTTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTg > 1:7496636/1‑71 (MQ=255) ttACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCt < 1:2980562/69‑1 (MQ=255) ttACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTg > 1:7031671/1‑70 (MQ=255) ttACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTg < 1:4967798/70‑1 (MQ=255) cAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGa < 1:7335919/70‑1 (MQ=255) agaagaagaATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAg < 1:43234/71‑1 (MQ=255) aagaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAgg > 1:2333630/1‑70 (MQ=255) aagaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAgg > 1:7269199/1‑70 (MQ=255) aagaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAgg > 1:803294/1‑70 (MQ=255) agaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGa > 1:3703000/1‑70 (MQ=255) gaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:822887‑M2/56‑6 (MQ=255) gaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:4688280‑M2/56‑6 (MQ=255) gaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:1442497‑M2/56‑6 (MQ=255) gaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:1600101‑M2/56‑6 (MQ=255) gaagaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAggta < 1:4272286‑M2/55‑5 (MQ=255) agaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAg < 1:7907376‑M2/50‑2 (MQ=255) agaaTATATTGGTAGCATGGCGTTAATTACAGGTCATCAAGCCACTTCAg < 1:4281473‑M2/50‑2 (MQ=255) gaaTATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACt < 1:2644213/71‑1 (MQ=255) atatatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAATGAAAACTc < 1:2219329/70‑1 (MQ=255) atatatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTc < 1:1413879/70‑1 (MQ=255) atatatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTc < 1:4936376/70‑1 (MQ=255) atatatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACATCAGGTAATCCCTGCGAAGGAAAACTCa > 1:4842996/1‑71 (MQ=255) tatatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCAc > 1:5071163/1‑71 (MQ=255) tatTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaa < 1:2109551/62‑1 (MQ=255) gTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCaa > 1:6636266/1‑71 (MQ=255) tAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAt < 1:4795106/71‑1 (MQ=255) aGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTc > 1:6888054/1‑60 (MQ=255) gCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGaa > 1:6199382/1‑50 (MQ=255) gCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAttt > 1:7253731/1‑71 (MQ=255) gCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAttt > 1:2206381/1‑71 (MQ=255) cATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAttt < 1:686719/70‑1 (MQ=255) aTGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTc < 1:3796104/57‑1 (MQ=255) tGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGc > 1:7911333/1‑71 (MQ=255) tGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGc > 1:1140767/1‑71 (MQ=255) ggCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGc > 1:2997244/1‑70 (MQ=255) gCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:4231705‑M2/35‑6 (MQ=255) gCGTTAATTACCGGTCATCAAGCCACTTCAggtaa < 1:2058014‑M2/35‑6 (MQ=255) tAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCg > 1:7637724/1‑39 (MQ=255) tAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCg > 1:1525856/1‑39 (MQ=255) tAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCaa < 1:417029/68‑1 (MQ=255) tAATTACCGGTCATCAAGCCACTTAAGGTAATCCCTGCg > 1:2968895/1‑39 (MQ=255) aaTTACCGGTCATCAAGCCACTTCAggtaattaacgccatgctaccaatatattcttcttctgtaatagct < 1:4754594‑M2/71‑47 (MQ=255) aaTTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCAc > 1:5550862/1‑51 (MQ=255) aaTTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATa > 1:1079885/1‑70 (MQ=255) tACCGGTCATCAAGCCACTTCAggtaattaacgccatgctac < 1:4505671‑M2/42‑21 (MQ=255) tACCGGTCATCAAGCCACTTCAggtaattaacgccatgctac < 1:2691300‑M2/42‑21 (MQ=255) tACCGGTCATCAAGCCACTTCAggtaattaacgccatgctac < 1:7008175‑M2/42‑21 (MQ=255) tACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGcc < 1:4101424/62‑1 (MQ=255) tACCGGTCATCAAGCCACATCAggtaattaacgccatgctac < 1:1810729‑M2/42‑21 (MQ=255) aCCGGTCATCAAGCCACTTCAggtaattaacgccatgctaccaatatattcttcttctgtaatagctgaa > 1:2492419‑M2/1‑21 (MQ=255) aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:7814263/1‑42 (MQ=255) aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:7058226/1‑42 (MQ=255) aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:3397182/1‑42 (MQ=255) aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:3668208/1‑42 (MQ=255) aCCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACatt < 1:3271180/70‑1 (MQ=255) ccGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGcc < 1:3800732/60‑1 (MQ=255) cGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAt > 1:3052207/1‑53 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAttt < 1:2172521/54‑1 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTTGCCAAATACATTAttt < 1:1531698/71‑1 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCaaa < 1:4442027/61‑1 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCaaa < 1:3177195/61‑1 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACattatt > 1:5307484/1‑70 (MQ=255) ggTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACattatt > 1:535890/1‑70 (MQ=255) gTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaa < 1:3692369/36‑1 (MQ=255) gTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGaa < 1:78285/36‑1 (MQ=255) gTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTta > 1:7372695/1‑71 (MQ=255) tcatcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtac > 1:5175755/1‑71 (MQ=255) tcatcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtac < 1:1506777/71‑1 (MQ=255) tcatcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtac < 1:383871/71‑1 (MQ=255) tcatcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtac < 1:1679653/71‑1 (MQ=255) catcaAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:1653583/1‑36 (MQ=255) catcaAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:5650684/1‑36 (MQ=255) catcaAGCCACTTCAGGTAATCCCTGCGAAGGaaaa > 1:5641418/1‑36 (MQ=255) atcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtact < 1:2706710/70‑1 (MQ=255) tcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATc < 1:6603063/44‑1 (MQ=255) tcaAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATc < 1:5488836/44‑1 (MQ=255) caAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTg < 1:721430/49‑1 (MQ=255) caAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACattatt < 1:4724610/64‑1 (MQ=255) aGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACat < 1:4827643/58‑1 (MQ=255) ccACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCaa < 1:3359423/50‑1 (MQ=255) ccACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCa < 1:6644504/49‑1 (MQ=255) ccACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGa > 1:3480914/1‑70 (MQ=255) aCTTCAGGTAATCCCTGCTAAGGAAAACTCACCGATCAATTTGGCCaa < 1:719708/48‑1 (MQ=255) aCTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtac < 1:1954855/61‑1 (MQ=255) ttCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAt < 1:5830330/38‑1 (MQ=255) ttCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAAt > 1:4604898/1‑48 (MQ=255) ttCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTtacta > 1:2363261/1‑61 (MQ=255) tCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAtt > 1:741172/1‑38 (MQ=255) tCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAAtt > 1:6190366/1‑38 (MQ=255) cAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGAGCCTg < 1:7006790/69‑1 (MQ=255) aGGTAATCCCTGCGAAGGAAAACTCACCGATCAAttt < 1:3923138/37‑1 (MQ=255) aGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGAGCCTgaag < 1:7743781/71‑1 (MQ=255) aGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGAGCCTgaag < 1:2113119/71‑1 (MQ=255) | TAGTTCAGCTATTACAGAAGAAGAATATATTGGTAGCATGGCGTTAATTACCGGTCATCAAGCCACTTCAGGTAATCCCTGCGAAGGAAAACTCACCGATCAATTTGGCCAAATACATTATTTACTACTGGAGCCTGAAG > AP009048/3191253‑3191392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |