| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3319085 | 105 (1.290) | 8 (0.110) | 5/90 | NT | 7.5% | coding (594/1344 nt) | argG | argininosuccinate synthetase |
| ? | AP009048 | = 3319098 | 102 (1.360) | coding (607/1344 nt) | argG | argininosuccinate synthetase | |||||
ATTTATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3319013‑3319085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAAAC < AP009048/3319098‑3319030 ATTTATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGC > 1:6214161/1‑71 TTTATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCT < 1:6030778/71‑1 TATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT < 1:5462342/70‑1 CGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT > 1:1999147/1‑52 GACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAA < 1:833987/66‑1 GACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTC > 1:705030/1‑52 GTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAG > 1:345945/1‑56 GTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAG > 1:6306129/1‑56 GTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAG > 1:3840062/1‑56 GAAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAGCA < 1:7626348/51‑1 AAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAGCATG < 1:2712795/52‑1 AAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCAAGCATG < 1:6948335/52‑1 AAAAAGCCTACTCCACAGACTCCAACATGCTTCATGCGTTGCACCA < 1:5077982/46‑1 cgaTTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCG > 1:7272151/4‑70 GCTTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAA < 1:430460/71‑1 GCTTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAA < 1:2105020/71‑1 GCTTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGA < 1:2084052/70‑1 CTTCATGCGTTGCACCAAGCATGTTGGAGTCTGTG < 1:6093117/35‑1 TTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAAAC > 1:6838178/1‑71 TTCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAAAC > 1:7227424/1‑71 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGA < 1:7266806/67‑1 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACA > 1:131552/1‑51 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACA > 1:4968180/1‑51 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTC < 1:5937863/47‑1 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTC < 1:6073714/47‑1 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTC < 1:6802172/47‑1 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTC < 1:5788876/47‑1 TCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTC < 1:5367386/47‑1 ATTTATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3319013‑3319085‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttCATGCGTTGCACCAAGCATGTTGGAGTCTGTGGAGTAGGCTTTTTCGACAGACATTTTGTAGTCGAAAC < AP009048/3319098‑3319030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |