| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3319085 | 105 (1.290) | 8 (0.110) | 5/90 | NT | 7.5% | coding (594/1344 nt) | argG | argininosuccinate synthetase |
| ? | AP009048 | = 3319098 | 102 (1.360) | coding (607/1344 nt) | argG | argininosuccinate synthetase | |||||
Only 100 of 167 total aligned reads displayed.
TATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCGTCAACCCGATTATG > AP009048/3319016‑3319154 | tATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTg > 1:2447956/1‑71 (MQ=255)tATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT < 1:5462342‑M1/70‑1 (MQ=255) tGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTgg < 1:126525/70‑1 (MQ=255) ttGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCa < 1:1567030/71‑1 (MQ=255) ccTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACg < 1:4131123/71‑1 (MQ=255) gCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCAt > 1:6711752/1‑71 (MQ=255) gTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGaa > 1:7227424‑M2/1‑69 (MQ=255) gTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGaa > 1:6838178‑M2/1‑69 (MQ=255) ttCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGaagc < 1:2105020‑M2/71‑5 (MQ=255) ttCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGaagc < 1:430460‑M2/71‑5 (MQ=255) tCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGa < 1:7266806‑M2/67‑2 (MQ=255) cGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTT > 1:1999147‑M1/1‑52 (MQ=255) gACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcaccaa < 1:833987‑M1/66‑16 (MQ=255) gACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa < 1:5670700/71‑1 (MQ=255) gACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa < 1:6312681/71‑1 (MQ=255) cTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAg > 1:330045/1‑70 (MQ=255) tACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa > 1:1763858/1‑71 (MQ=255) cAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATc > 1:2039433/1‑71 (MQ=255) aaaTGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa > 1:3734337/1‑64 (MQ=255) aaaTGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa > 1:7458855/1‑64 (MQ=255) aaaTGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa > 1:6589839/1‑64 (MQ=255) aaTGTCTGTTGAAAAAGCCTACTCCACAGACTCCAACATGCTTgg > 1:2478396/1‑45 (MQ=255) gtctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcaccaag > 1:3840062‑M1/1‑40 (MQ=255) gtctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcaccaag > 1:6306129‑M1/1‑40 (MQ=255) tctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGa < 1:3868034/58‑1 (MQ=255) tctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt < 1:296490/70‑1 (MQ=255) tctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt < 1:934913/70‑1 (MQ=255) tctgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAAt < 1:421889/70‑1 (MQ=255) tgtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGa > 1:4968180‑M2/1‑50 (MQ=255) gtcGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAgg < 1:6654732/58‑1 (MQ=255) gtcGAAAAAGCCTACACCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAgg < 1:7292825/58‑1 (MQ=255) tcGGAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCt < 1:3703342/70‑1 (MQ=255) cGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa < 1:7901910/57‑1 (MQ=255) cGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa < 1:5584952/57‑1 (MQ=255) gAAAAAGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcaccaagca < 1:7626348‑M1/51‑19 (MQ=255) gAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGa < 1:5367386‑M2/47‑2 (MQ=255) gAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa < 1:5738515/53‑1 (MQ=255) gAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa < 1:875725/53‑1 (MQ=255) gAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGaa < 1:2207465/53‑1 (MQ=255) aaaaaGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcaccaagcatg < 1:2712795‑M1/52‑21 (MQ=255) aaaaaGCCTACTCCACAGACTCCAACATGCTTcatgcgttgcacca < 1:5077982‑M1/46‑15 (MQ=255) aaaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAAc > 1:7597766/1‑71 (MQ=255) aaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa < 1:1355337/54‑1 (MQ=255) aaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa < 1:3347596/54‑1 (MQ=255) aaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:2571844/1‑55 (MQ=255) aaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:4913174/1‑55 (MQ=255) aaaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:452002/1‑55 (MQ=255) aaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTc < 1:7212260/71‑1 (MQ=255) aaaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTc < 1:381773/71‑1 (MQ=255) aaGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTc > 1:6883902/1‑70 (MQ=255) gCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAg > 1:6712669/1‑71 (MQ=255) gCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAg < 1:5394900/71‑1 (MQ=255) cTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCg > 1:7147275/1‑71 (MQ=255) tACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGa < 1:1824655/47‑1 (MQ=255) tACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGt > 1:4973621/1‑71 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:6906240/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:6894332/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:7747762/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:6521896/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:6343139/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:6170867/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:3603944/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAt > 1:5116787/1‑46 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCt < 1:1425077/48‑1 (MQ=255) cTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTc > 1:1583115/1‑70 (MQ=255) cacaGACTCCAACATGCTTGGTGCAACGCATGaag < 1:6093117‑M2/35‑4 (MQ=255) cacaGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAg > 1:6425929/1‑40 (MQ=255) cacaGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGaa < 1:5189929/49‑1 (MQ=255) cacaGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGGGTCaaaa < 1:5715419/71‑1 (MQ=255) acaGACTCCAACATGCTTGGTTCATCGCATGAAGCGAAGGATCTGGAATACCTCAACTCCTGCGTCaaaa < 1:59055/70‑1 (MQ=255) caGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGAta > 1:1513404/1‑41 (MQ=255) caGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATc < 1:1460795/71‑1 (MQ=255) aGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGaa > 1:1923741/1‑46 (MQ=255) aGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCa > 1:4353888/1‑65 (MQ=255) aCTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCaaaa < 1:6583164/66‑1 (MQ=255) tCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATc < 1:516622/66‑1 (MQ=255) cAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGaa > 1:240432/1‑40 (MQ=255) cAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCGTCAAcc > 1:4348398/1‑71 (MQ=255) aCATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCGTCAAccc > 1:6271839/1‑70 (MQ=255) aCATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCGTCAAccc > 1:4811881/1‑70 (MQ=255) cATGCTTGGTGCAACGCATGaagcatgttggagtctgtggagtaggcttttt < 1:6948335‑M2/52‑33 (MQ=255) cATGCTTGGTGCAACGCATGaagcatgttggagtctgtggagtaggcttttt < 1:2712795‑M2/52‑33 (MQ=255) cATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCa > 1:2279590/1‑50 (MQ=255) cgattcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttcgacagacattttgtagtcg > 1:7272151‑M1/4‑5 (MQ=255) gCTTcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttcgacagacattttgtagtcgaa < 1:2105020‑M1/71‑68 (MQ=255) gCTTcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttcgacagacattttgtagtcga < 1:2084052‑M1/70‑67 (MQ=255) gCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAAt > 1:2334085/1‑57 (MQ=255) cTTcatgcgttgcaccaagcatgttggagtctgtg < 1:6093117‑M1/35‑33 (MQ=255) cTTGGTGCAACGCATGaagcatgttggagtctgtggagtaggctttttcgacagac > 1:345945‑M2/1‑16 (MQ=255) cTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCaa > 1:1678075/1‑41 (MQ=255) ttcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttcgacagacattttgtagtcgaaac > 1:6838178‑M1/1‑2 (MQ=255) ttGGTGCAACGCATGaagcatgttggagtctgtggagtaggctttttcgacagacattttgtagtc < 1:833987‑M2/66‑52 (MQ=255) ttGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCg < 1:4947406/57‑1 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttcgaca > 1:131552‑M1/1‑1 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttc < 1:6802172‑M1/47‑47 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttc < 1:5367386‑M1/47‑47 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttc < 1:5788876‑M1/47‑47 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttc < 1:5937863‑M1/47‑47 (MQ=255) tcatgcgttgcaccaagcatgttggagtctgtggagtaggctttttc < 1:6073714‑M1/47‑47 (MQ=255) tGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAAc > 1:7736721/1‑40 (MQ=255) | TATGATTGCCTGCGGTTTCGACTACAAAATGTCTGTCGAAAAAGCCTACTCCACAGACTCCAACATGCTTGGTGCAACGCATGAAGCGAAGGATCTGGAATACCTCAACTCCAGCGTCAAAATCGTCAACCCGATTATG > AP009048/3319016‑3319154 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |