| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3459685 = | NA (NA) | 6 (0.090) | 4/84 | NT | NA | coding (1053/1185 nt) | tufB | protein chain elongation factor EF‑Tu |
| ? | AP009048 | 3459719 = | NA (NA) | coding (1019/1185 nt) | tufB | protein chain elongation factor EF‑Tu | |||||
TACCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3459759‑3459685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtaCCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGC > AP009048/3459719‑3459788 TACCGTGCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:5762362/1‑71TACCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGA > 1:7331692/1‑70 CCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG < 1:2623654/71‑1 CCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:686564/1‑71 CCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:7800771/1‑71 CGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:6793812/71‑1 CGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:1434131/1‑70 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGTAAGGCGTAGAGATGGTA < 1:2144644/71‑1 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA < 1:1672797/71‑1 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT > 1:1747630/1‑70 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT > 1:3478097/1‑70 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT > 1:7343422/1‑70 GTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT > 1:7590796/1‑70 TCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:3436987/1‑66 TCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:4850360/1‑66 CGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:2624386/67‑1 CGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:4717437/67‑1 CGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:2615078/67‑1 CGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:7216783/1‑64 GTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA < 1:458885/64‑1 GTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA < 1:7601014/64‑1 CTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:2278627/1‑59 CTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:6550169/1‑59 CCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGA > 1:1990256/1‑50 CCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCCTAGAGA > 1:442485/1‑50 ACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:290533/1‑49 ACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGG > 1:1169786/1‑49 TGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGA < 1:214883/41‑1 GACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:4644324/44‑1 GACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:1228121/44‑1 GACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:4533038/44‑1 GACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:2302920/44‑1 GACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGT < 1:2293646/44‑1 GTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:3126204/1‑38 GTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:6502530/1‑38 GTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:7579236/1‑38 GTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGAT > 1:2632613/1‑38 ACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA < 1:2141811/39‑1 TACCATCGAACTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACT < 1:2450443/65‑1 TACCATCGAACTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACGGAAGTAG < 1:1477981/61‑1 CCATCGAACTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGG > 1:483341/1‑71 CCATCGAACTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGG > 1:2130727/1‑71 CCATCGAACTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACAGAAGTAGAACTGCGGACGG > 1:4940017/1‑71 CTGCCGGAAGGCGTAGAGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTT > 1:4427531/1‑71 AGATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGA > 1:692630/1‑71 GATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGAC < 1:1267729/71‑1 GATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGA < 1:3503027/70‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACG < 1:4400698/71‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACG < 1:6557249/71‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACG < 1:4683044/71‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACG < 1:3431826/71‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACG < 1:1906455/71‑1 ATGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGC < 1:2983574/49‑1 TGGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGG > 1:760177/1‑71 GGTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGG > 1:3322592/1‑70 GTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGGGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCC < 1:2721599/71‑1 GTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCC < 1:633703/71‑1 GTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTT < 1:2159220/50‑1 GTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCT < 1:7655222/48‑1 GTACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCT < 1:892729/48‑1 TACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCG > 1:6417012/1‑71 TACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCG > 1:7361872/1‑71 ACCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGC > 1:7895742/1‑71 TACCGTCCGCAGTTCTACTTCCGTACTACTGACGTGACTGGTACCATCGAACTGCCGGAAGGCGTAGAGATGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3459759‑3459685‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtaCCAGTCACGTCAGTAGTACGGAAGTAGAACTGCGGACGGTAGCCTTTGAAGAACGGAGTATGACGGCCGC > AP009048/3459719‑3459788 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |