| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3663743 | 82 (1.010) | 5 (0.070) | 3/92 | NT | 6.6% | coding (417/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase |
| ? | AP009048 | = 3663770 | 65 (0.850) | coding (390/1068 nt) | rffG | dTDP‑glucose 4,6‑dehydratase | |||||
ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3663673‑3663743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaTCATATCTCCACTGACGAAGTATATGGTGACCTGCACTCGACGGATGATTTCTTCACCGAAACCACG < AP009048/3663770‑3663704 ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:3135713/71‑1ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:4565168/71‑1ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA > 1:4709672/1‑71ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:7142040/71‑1ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:7690813/71‑1ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:7920027/71‑1 CATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCATCATATCTCCACTGACGAAGTATA < 1:7472969/71‑1 ATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:2764668/46‑1 ATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:3463788/46‑1 ATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA < 1:6315198/46‑1 CGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCATCATATCTCCACTGACGAAGTATATGGT < 1:3490744/71‑1 ATCATCCGTCGAGTGCAGGTCATCATATCTCCACTGACGAAGTATA < 1:5553204/46‑1 ATCATCCGTCGAGTGCAGGTCATCATATCTCCACTGACGAAGTATA < 1:842082/46‑1 CATCCGTCGAGTGCAGGTCATCATATCTCCACTGACGAAGTATATG > 1:2846668/1‑46 TCATCATATCTCCACTGACGAAGTATATGGTGACCTGCACTCGACGGATGATTTCTTCACCGAAACCACG < 1:973806/70‑1 CATCATATCTCCACTGACGAAGTATATGGTGACCTGCACTCGACGGAT > 1:6234928/1‑48 ACGCGGAATAAGGGCTGCTCGGCGCATACGGCGTGGTTTCGGTGAAGAAATCATCCGTCGAGTGCAGGTCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3663673‑3663743‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaTCATATCTCCACTGACGAAGTATATGGTGACCTGCACTCGACGGATGATTTCTTCACCGAAACCACG < AP009048/3663770‑3663704 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |