| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3677973 | 117 (1.440) | 7 (0.100) | 3/88 | NT | 5.8% | coding (739/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding |
| ? | AP009048 | = 3677990 | 123 (1.680) | coding (722/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding | |||||
GGTGATGCCGCCCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3677899‑3677973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTGGGAAACCATCACCGAAG < AP009048/3677990‑3677922 GGTGATGCCGCCCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATG < 1:3131976/71‑1 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:103986/1‑52 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:2286066/1‑52 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:2574417/1‑52 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:5405657/1‑52 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:5112635/1‑52 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATG < 1:3056228/48‑1 CTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATG < 1:4096135/48‑1 TCCCAACCTAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATC < 1:2343384/56‑1 TCCCAACCTAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATC < 1:5243013/56‑1 AACCGAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATCC < 1:111521/53‑1 AACCGAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATCC < 1:6818974/53‑1 CCGAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATCCAG > 1:4160745/1‑53 CCGAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATCCAG > 1:5474509/1‑53 CCGAACTGAATCAGTTTTTCTGCGTATGCTGGTGGAAGAAGGTACCGATCCAG > 1:3011655/1‑53 GCTGGTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTGGGAAACCATCACCG < 1:3532987/71‑1 GCTGGTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTGGGAAACCATCACCG < 1:6638530/71‑1 TGGTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTG > 1:3425963/1‑55 GTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTGGGAAACCATCACCGAAG < 1:4571537/70‑1 GGTGATGCCGCCCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3677899‑3677973‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggTGGAAGAAGGTACCGATCCAGCATACGCAGAAAAACTGATTCAGTTCGGTTGGGAAACCATCACCGAAG < AP009048/3677990‑3677922 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |