| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3677973 | 117 (1.440) | 7 (0.100) | 3/88 | NT | 5.8% | coding (739/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding |
| ? | AP009048 | = 3677990 | 123 (1.680) | coding (722/1476 nt) | ilvC | ketol‑acid reductoisomerase, NAD(P)‑binding | |||||
Only 100 of 155 total aligned reads displayed.
TGCCGCCCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGCACAGGA > AP009048/3677904‑3678041 | ccgccCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATc < 1:4689251/71‑1 (MQ=255) cgccCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCg > 1:3876834/1‑71 (MQ=255) gccCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCgg > 1:7908155/1‑71 (MQ=255) tGTTTCAGTGCTTCGGTGATGGTTTGCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAcc > 1:2781830/1‑71 (MQ=255) tGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTa > 1:2158239/1‑69 (MQ=255) gTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACct > 1:4640880/1‑71 (MQ=255) tttCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc < 1:5226500/68‑1 (MQ=255) tCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACcttct > 1:488375/1‑71 (MQ=255) cAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACcttct < 1:6709504/70‑1 (MQ=255) aGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCttcttc < 1:4805561/71‑1 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTccccc < 1:3402226/71‑1 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCAc < 1:4571537‑M2/70‑2 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:5112635‑M1/1‑52 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:103986‑M1/1‑52 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:2574417‑M1/1‑52 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGG > 1:2286066‑M1/1‑52 (MQ=255) cTTCGGTGATGGTTTCCCAACCGAACTGAATCACTTTTTGTGCGTATGCTGGATCGGTAc < 1:1112558/60‑1 (MQ=255) cGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCAccagc < 1:6638530‑M2/71‑6 (MQ=255) cGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCAccagc < 1:3532987‑M2/71‑6 (MQ=255) gTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCtt < 1:4554689/71‑1 (MQ=255) gTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCtt < 1:3450662/71‑1 (MQ=255) gATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCttcttc > 1:5487426/1‑60 (MQ=255) aTGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc > 1:3710352/1‑52 (MQ=255) aTGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc > 1:5926816/1‑52 (MQ=255) aTGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACcttct < 1:5880930/57‑1 (MQ=255) aTGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACcttct < 1:1880176/57‑1 (MQ=255) aTGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTc < 1:4378247/71‑1 (MQ=255) tGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:7644448/71‑1 (MQ=255) tGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:6565174/71‑1 (MQ=255) tGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:7664224/71‑1 (MQ=255) tGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:1273476/71‑1 (MQ=255) tGGTTTCCCAACCGAACTGAATCAGTTTTTCTCCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:2956040/71‑1 (MQ=255) ggTTTCCCAACCGGACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:2716619/70‑1 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACctt < 1:7755179/52‑1 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCttcttc < 1:206815/56‑1 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg > 1:5635379/1‑69 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGa < 1:472653/70‑1 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGa < 1:7151556/70‑1 (MQ=255) gTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGa < 1:2715656/70‑1 (MQ=255) tttCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAg > 1:1136146/1‑71 (MQ=255) ttCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTcca > 1:3358154/1‑56 (MQ=255) tCCCAACCTAACTGAATCAGTTTTTCTGCGTATGCTGGtggaagaaggtaccgatc < 1:2343384‑M1/56‑19 (MQ=255) ccAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc > 1:6814534/1‑44 (MQ=255) ccAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc > 1:4597627/1‑44 (MQ=255) ccAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTAc > 1:7819663/1‑44 (MQ=255) ccAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGcaca < 1:1956160/71‑1 (MQ=255) ccAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGcaca < 1:633813/71‑1 (MQ=255) cAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCAcca > 1:3425963‑M2/1‑52 (MQ=255) cAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCAcag < 1:1692028/71‑1 (MQ=255) aaCCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACcttc < 1:6374415/46‑1 (MQ=255) aCCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCAcagca < 1:6849911/71‑1 (MQ=255) ccGAACTGAATCAGTTTTTCTGCGTATGCTGGtggaagaaggtaccgatccag > 1:4160745‑M1/1‑32 (MQ=255) ccGAACTGAATCAGTTTTTCTGCGTATGCTGGtggaagaaggtaccgatccag > 1:3011655‑M1/1‑32 (MQ=255) ccGAACTGAATCAGTTTTTCTGCGTATGCTGGtggaagaaggtaccgatccag > 1:5474509‑M1/1‑32 (MQ=255) ccGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGca > 1:1669917/1‑65 (MQ=255) ccGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCAcag > 1:5376208/1‑68 (MQ=255) cGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGTTACCTTCTTCCACCAGCTTGTCGAAGCAcagca > 1:7008161/1‑69 (MQ=255) cGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCaga < 1:7922138/71‑1 (MQ=255) gAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCagag < 1:1882223/71‑1 (MQ=255) gAACTGAATCAGTTTTTCTGCGTATGCTCGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCagag < 1:5682227/71‑1 (MQ=255) aaCTGAATGAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTGGAAGCACAGCaga > 1:722952/1‑69 (MQ=255) aCTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGGACAGCagagag > 1:7412822/1‑71 (MQ=255) aCTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCagagag < 1:3140259/71‑1 (MQ=255) aCTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCagagag < 1:433846/71‑1 (MQ=255) cTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTcc < 1:2155374/43‑1 (MQ=255) cTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTcc < 1:6437646/43‑1 (MQ=255) cTGAATCAGTTTTTATGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGagc < 1:2595055/71‑1 (MQ=255) gAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCagag > 1:4940816/1‑66 (MQ=255) aaTCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAg > 1:1929989/1‑55 (MQ=255) tCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGagccagcc > 1:3473423/1‑71 (MQ=255) tCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGagccagcc > 1:5644123/1‑71 (MQ=255) aGTTTTTCTGCGTATGCTGGATCGGTACCttcttc < 1:7904654/35‑1 (MQ=255) aGTTTTTCTGCGTATGCTGGATCGGTACCttcttc < 1:4465338/35‑1 (MQ=255) aGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCAcagca > 1:6307365/1‑58 (MQ=255) aGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCAcagca > 1:3215325/1‑58 (MQ=255) aGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTg > 1:5583291/1‑71 (MQ=255) gTTTTTCTGCGTATGCTGGATCTGTACCTTCTTCCACCAGCTTGTCg < 1:6968532/47‑1 (MQ=255) tttttCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCg < 1:1155942/46‑1 (MQ=255) agttttTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGt > 1:1281308/3‑44 (MQ=38) ttttCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCaa > 1:3966298/1‑71 (MQ=255) tttCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGaa > 1:1192978/1‑46 (MQ=255) tttCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGc > 1:193505/1‑68 (MQ=255) tttCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCaa > 1:3042238/1‑70 (MQ=255) gCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATAcc > 1:1785289/1‑71 (MQ=255) gCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATAc > 1:7110890/1‑70 (MQ=255) cGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCg > 1:6442894/1‑71 (MQ=255) tATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGca > 1:7570208/1‑41 (MQ=255) tATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:6199913/1‑71 (MQ=255) tGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:5696474/1‑69 (MQ=255) tGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:5459386/1‑69 (MQ=255) tGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:2832539/1‑69 (MQ=255) tGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:5957767/1‑69 (MQ=255) tGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGca > 1:3661321/1‑69 (MQ=255) gCTGGtggaagaaggtaccgatccagcatacgcagaaaaactgattcagttcggttgggaaaccatcaccg < 1:6638530‑M1/71‑67 (MQ=255) cTGGATCGGTACCTTCTTCCAccagcatacgcagaaaaactgattcagttcgg > 1:4160745‑M2/1‑21 (MQ=255) tggtggaagaaggtaccgatccagcatacgcagaaaaactgattcagttcggttg > 1:3425963‑M1/1‑3 (MQ=255) ggATCGGTACCTTCTTCCAccagcatacgcagaaaaactgattcagttcggtt < 1:6818974‑M2/53‑35 (MQ=255) ggATCGGTACCTTCTTCCAccagcatacgcagaaaaactgattcagttcggtt < 1:111521‑M2/53‑35 (MQ=255) gATCGGTACCTTCTTCCAccagcatacgcagaaaaactgattcagttaggttggga < 1:5243013‑M2/56‑39 (MQ=255) gATCGGTACCTTCTTCCAccagcatacgcagaaaaactgattcagttaggttggga < 1:2343384‑M2/56‑39 (MQ=255) | TGCCGCCCTGTTTCAGTGCTTCGGTGATGGTTTCCCAACCGAACTGAATCAGTTTTTCTGCGTATGCTGGATCGGTACCTTCTTCCACCAGCTTGTCGAAGCACAGCAGAGAGCCAGCCTGCAACATACCGCACAGGA > AP009048/3677904‑3678041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |