New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	3710900 =	78 (0.960)	4 (0.060)	3/84	NT	6.2%	intergenic (+231/‑148)	mioC/gidA	FMN‑binding protein MioC/glucose‑inhibited cell‑division protein
	?	AP009048	3710925 =	54 (0.770)					intergenic (+256/‑123)	mioC/gidA	FMN‑binding protein MioC/glucose‑inhibited cell‑division protein

GGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3710976‑3710900 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatctctAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCT  >  AP009048/3710925‑3710970                                                                                                                             GGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTG                                                      <  1:2566090/71‑1             ACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGA                                                     <  1:5870213/60‑1                              TTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCT                                                  >  1:6571552/1‑46                                                      GAGATCTGTTCTATTGTGATCTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCT  >  1:4003611/1‑70                                                         ATCTGTTCTATTGTGATCTCTAAATAAATAGATCTTCTTTTTAA                         >  1:1012961/1‑44                                                            TGTTGTATTGTGATCTCTAAATAAATAGATCTTCTTT                             <  1:5231159/37‑1                                                            TGTTCTATTGTGATCTCTAAATAAATAGATCTTCTTT                             <  1:2678580/37‑1                                                                          CTCTAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAG          >  1:6487219/1‑42                                                                                                                             GGCTTGAGAAAGACCTGGGATCCTGGGTATTAAAAAGAAGATCTATTTATTTAGAGATCTGTTCTATTGTGATCTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AP009048/3710976‑3710900 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatctctAAATAAATAGATCTTCTTTTTAATACCCAGGATCCCAGGTCTTTCT  >  AP009048/3710925‑3710970

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.