| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3798383 = | 96 (1.180) | 11 (0.150) | 4/86 | NT | 11.9% | coding (371/453 nt) | yicN | conserved hypothetical protein |
| ? | AP009048 | 3798412 = | 79 (1.110) | coding (400/453 nt) | yicN | conserved hypothetical protein | |||||
AACCAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3798458‑3798383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT > AP009048/3798412‑3798479 AACCAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCAT > 1:3355210/1‑71AACCAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCAT < 1:443020/71‑1 CCAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTT > 1:4799094/1‑71 CAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTT > 1:7307649/1‑70 CAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTT > 1:6160298/1‑70 GCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTTC < 1:1056016/52‑1 GCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTTC < 1:3881779/52‑1 GCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATT < 1:7562837/50‑1 GCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATT < 1:2906099/50‑1 TGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTTCAG > 1:1743690/1‑52 AAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATT < 1:7820995/46‑1 GAAAAGCATTAATATCCTGCATTTTAGATGCGCTATAACGCGTTCTTTCAGCCTGCC < 1:759898/57‑1 GAAAAGCATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCC < 1:3642161/57‑1 GAAAAGCATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCC < 1:5511501/57‑1 AAAAGCATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGG > 1:5905957/1‑71 AAAGCATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGG > 1:4030053/1‑60 AAAGCATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGG > 1:6600910/1‑60 ATTAATATCCTGCATTTCAGATGCGCTATACCGCGTTCTTTCAGCCTGCCGAGGGCG > 1:7436176/1‑57 ATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCAT > 1:2135479/1‑71 ATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAG > 1:1535019/1‑44 ATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAG > 1:5863842/1‑44 ATTAATATCCTGCATTTCAGATGCGCTATAACGCGTTCTTTCAG > 1:5881706/1‑44 TTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGT > 1:3542121/1‑71 TTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGT > 1:5214652/1‑71 TTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTC > 1:3244190/1‑71 CAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCT > 1:3442651/1‑70 AGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT < 1:17513/70‑1 AGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT < 1:1096999/70‑1 GATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT < 1:5588475/69‑1 AACCAGTGAACGCCCTCGGCAGGCTGAAAGAACGCGTTATAGCGCATCTGAAAAGCATTAATATCCTGCATTTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3798458‑3798383‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT > AP009048/3798412‑3798479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |