| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3798383 = | 96 (1.180) | 11 (0.150) | 4/86 | NT | 11.9% | coding (371/453 nt) | yicN | conserved hypothetical protein |
| ? | AP009048 | 3798412 = | 79 (1.110) | coding (400/453 nt) | yicN | conserved hypothetical protein | |||||
Only 100 of 140 total aligned reads displayed.
GTCAGGCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT > AP009048/3798346‑3798479 | gtcaggCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgcg < 1:5691573/71‑1 (MQ=255)gtcaggCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgcg < 1:3265062/71‑1 (MQ=255) tcaggCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgcgc > 1:1158792/1‑71 (MQ=255) tcaggCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgcgc > 1:3333532/1‑71 (MQ=255) aggCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCta < 1:5392485/71‑1 (MQ=255) gCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCtata < 1:5622290/71‑1 (MQ=255) tGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATaa > 1:1294153/1‑70 (MQ=255) gcgcTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTACAGATGCGCTATaa < 1:2503775/68‑1 (MQ=255) cgcTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAAcgcg < 1:3903010/71‑1 (MQ=255) cTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAAcgc < 1:6920668/68‑1 (MQ=255) cTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGtt > 1:3491272/1‑71 (MQ=255) aGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCt > 1:5295586/1‑71 (MQ=255) ggTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCtt > 1:7088896/1‑71 (MQ=255) ggTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCtt > 1:4927262/1‑71 (MQ=255) ggTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCtt < 1:1494439/71‑1 (MQ=255) ggTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCt < 1:6070920/70‑1 (MQ=255) gTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCttt < 1:6681021/71‑1 (MQ=255) ttCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAg > 1:6471612/1‑71 (MQ=255) ttCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAg > 1:1213504/1‑71 (MQ=255) gcgcGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTc > 1:3351719/1‑65 (MQ=255) cgcgAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTc > 1:7532081/1‑64 (MQ=255) gcgAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGcc < 1:2868827/71‑1 (MQ=255) cgAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgc > 1:5437513/1‑44 (MQ=255) cgAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATgc > 1:7385751/1‑44 (MQ=255) cgAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCg < 1:2430886/71‑1 (MQ=255) gAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTc < 1:6025582/61‑1 (MQ=255) gAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGcc > 1:7214332/1‑69 (MQ=255) gAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGa < 1:7340158/71‑1 (MQ=255) gAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGa < 1:2331608/71‑1 (MQ=255) aaaCCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAg > 1:7773235/1‑71 (MQ=255) aaCCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAAcg > 1:6259185/1‑50 (MQ=255) aaCCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAgg > 1:2383381/1‑71 (MQ=255) aaCCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAgg < 1:747359/71‑1 (MQ=255) aCCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGcc > 1:3107428/1‑66 (MQ=255) ccGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGc > 1:4053027/1‑71 (MQ=255) aaCCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:4181012/1‑71 (MQ=255) aaCCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:550256/1‑71 (MQ=255) aaCCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt < 1:7643532/71‑1 (MQ=255) aaCCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:2738689/1‑71 (MQ=255) CTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCa > 1:1743690‑M1/1‑52 (MQ=255) gaaaagcattaatatcctgcattttagATGCGCTATAACGCGTTCTTTCAGCCTGcc < 1:759898‑M2/30‑1 (MQ=255) gaaaagcattaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAGCCTGcc < 1:3642161‑M2/30‑1 (MQ=255) gaaaagcattaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAGCCTGcc < 1:5511501‑M2/30‑1 (MQ=255) GAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGc < 1:3881779‑M1/52‑1 (MQ=255) GAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGc < 1:1056016‑M1/52‑1 (MQ=255) aaaagcattaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTgg > 1:5905957‑M2/27‑71 (MQ=255) AAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTgg > 1:4799094‑M1/1‑71 (MQ=255) AAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTg > 1:6160298‑M1/1‑70 (MQ=255) AAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTg > 1:7307649‑M1/1‑70 (MQ=255) aaagcattaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAggg > 1:4030053‑M2/26‑60 (MQ=255) AATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCttt < 1:7820995‑M1/46‑1 (MQ=255) AATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGc < 1:7562837‑M1/50‑1 (MQ=255) AATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGc < 1:2906099‑M1/50‑1 (MQ=255) ATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGtt < 1:443020‑M1/71‑1 (MQ=255) ATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGtt > 1:3355210‑M1/1‑71 (MQ=255) tGCAGGATATTAATGCTTTTCAGATGCGCTATAATGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTg < 1:6734813/71‑1 (MQ=255) tGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCttt < 1:4986676/44‑1 (MQ=255) gCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTg > 1:1354898/1‑70 (MQ=255) cAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCa < 1:5874862/71‑1 (MQ=255) attaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAg > 1:1535019‑M2/21‑44 (MQ=255) attaatatcctgcatttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCAt > 1:2135479‑M2/21‑71 (MQ=255) gATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCAtt > 1:6499803/1‑70 (MQ=255) gATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTg < 1:4680411/71‑1 (MQ=255) gATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTg < 1:2467016/71‑1 (MQ=255) atatTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCa > 1:3552957/1‑58 (MQ=255) atatTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGa < 1:920245/71‑1 (MQ=255) ttAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCt < 1:490404/41‑1 (MQ=255) ttAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCt < 1:5821993/41‑1 (MQ=255) ttAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCt < 1:3002250/41‑1 (MQ=255) ttAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGaaa < 1:362304/70‑1 (MQ=255) tAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGa > 1:181120/1‑45 (MQ=255) tAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAAcc > 1:7041591/1‑71 (MQ=255) tAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAAcc > 1:2049863/1‑71 (MQ=255) aaTGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt < 1:7779785/51‑1 (MQ=255) aaTGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt < 1:4260760/51‑1 (MQ=255) aaTGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCa > 1:1779059/1‑62 (MQ=255) aTGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCg < 1:4998049/70‑1 (MQ=255) aTGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGt > 1:4626586/1‑71 (MQ=255) tGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTgg < 1:5807129/55‑1 (MQ=255) tGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGtt < 1:1570263/57‑1 (MQ=255) tGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGtt > 1:4567843/1‑71 (MQ=255) cTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGa > 1:5880114/1‑40 (MQ=255) cTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTc > 1:7159213/1‑71 (MQ=255) cTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTc > 1:2217592/1‑71 (MQ=255) cTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTc > 1:7384544/1‑71 (MQ=255) cTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTc > 1:7311216/1‑71 (MQ=255) ttttCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGtt > 1:5602503/1‑54 (MQ=255) ttttCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGtt > 1:1142546/1‑54 (MQ=255) ttttCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTg < 1:1642750/60‑1 (MQ=255) tttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGt > 1:5214652‑M2/7‑71 (MQ=255) ttcagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTc > 1:3244190‑M2/6‑71 (MQ=255) cagATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCt > 1:3442651‑M2/4‑70 (MQ=255) agATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCtt < 1:17513‑M2/68‑1 (MQ=255) agATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCtt < 1:1096999‑M2/68‑1 (MQ=255) gATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCtt < 1:5588475‑M2/68‑1 (MQ=255) aTGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:4112596/1‑39 (MQ=255) aTGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:6400839/1‑39 (MQ=255) aTGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:5666278/1‑39 (MQ=255) aTGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGtt > 1:802032/1‑39 (MQ=255) aTGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCAt > 1:583453/1‑51 (MQ=255) | GTCAGGCTGGCGCTAGGTTTTCTGCGCGAAACCGAACCTGAAATGCAGGATATTAATGCTTTTCAGATGCGCTATAACGCGTTCTTTCAGCCTGCCGAGGGCGTTCACTGGTTGCATTGAAACCGTTTCGTCTT > AP009048/3798346‑3798479 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |