| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3817455 = | 68 (0.840) | 4 (0.060) | 3/86 | NT | 7.0% | coding (561/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| ? | AP009048 | 3817482 = | 46 (0.640) | coding (534/2109 nt) | spoT | bifunctional (p)ppGpp synthetase II and guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase | |||||
TCGAAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3817528‑3817455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCACGGGCGATGCGGCGA > AP009048/3817482‑3817551 TCGAAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGT > 1:7079056/1‑71 GAAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGT < 1:6007711/69‑1 AAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT > 1:7765572/1‑71 AAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT < 1:6738908/71‑1 ATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT > 1:7190362/1‑69 ATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT > 1:6003007/1‑69 TTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT < 1:79924/68‑1 TTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT < 1:451594/68‑1 CGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT < 1:7523222/53‑1 GCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTT < 1:5938855/51‑1 GCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTT < 1:5929456/51‑1 GCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTT < 1:5770265/51‑1 TCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT < 1:4782210/38‑1 ACCGAACTCGAAGAGCTGGGTTTTAATGTGGTGGATACCTAAACG < 1:4358368/45‑1 AACTCGAAGAGCTGGGTTTTAATGTGGTGGATACCTAAAC > 1:3663160/1‑40 CTCGAAGAGCTGGGTTTTAATGTGGTGGATACCTAAACG > 1:483569/1‑39 CTCGAAGAGCTGGGTTTTAATGTGGTGGATACCTAAACG > 1:4460134/1‑39 GTTTTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCACGGGCGATGC < 1:7570216/70‑1 GTTTTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAG < 1:4347278/53‑1 TTTTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGC < 1:6673893/39‑1 TTTTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGC < 1:3480840/39‑1 TTTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCACGGGCGATGCGGC > 1:602867/1‑71 TTAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCAC > 1:163687/1‑58 TAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCACGGGCGATGCGGCGA > 1:4296117/1‑71 TAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTC > 1:6628056/1‑46 TCGAAATTTATAGCCCGCTGGCGCACCGTTTAGGTATCCACCACATTAAAACCGAACTCGAAGAGCTGGGTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3817528‑3817455‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggttttAATGTGGTGGATACCTAAACGGTGCGCCAGCGGGCTATAAATTTCGAGAGTTTCACGGGCGATGCGGCGA > AP009048/3817482‑3817551 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |