| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3836342 = | 94 (1.150) | 10 (0.140) | 4/88 | NT | 10.8% | coding (95/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| ? | AP009048 | 3836371 = | 80 (1.090) | coding (124/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
ATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3836415‑3836342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAA > AP009048/3836371‑3836439 ATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:2436247/1‑71 TCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAAC < 1:1029507/71‑1 TCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATA < 1:3631789/69‑1 CATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACAT < 1:1318203/71‑1 CATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACAT < 1:4519499/71‑1 TTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACA < 1:917799/68‑1 TGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAAC > 1:569967/1‑64 TACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAAC > 1:3376836/1‑58 CGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACATATCCAAAGTGA < 1:4938513/69‑1 AAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:4110818/1‑49 AAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:6888367/1‑49 AAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:625342/1‑49 TCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:2696879/1‑37 TCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:3075457/1‑37 TCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAA > 1:5915264/1‑37 TTGGATATGTTGTTGCCTGAAGGTAGTAATAACAT < 1:7105320/35‑1 TGTTGCCTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAT > 1:855998/1‑70 GCCTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTT < 1:2964678/39‑1 GCCTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTT < 1:6249394/39‑1 GCCTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTT < 1:656777/39‑1 CTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTTT > 1:6145606/1‑39 CTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTTT > 1:6136217/1‑39 CTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTTT > 1:4481852/1‑39 CTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTTT > 1:3295940/1‑39 CTGAAGGTAGTAATAACATATCCAAAGTGAAATGTTTT > 1:6654432/1‑38 AACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATT < 1:5005344/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA < 1:7341917/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA < 1:2857594/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA < 1:4718649/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA < 1:2131365/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA < 1:240662/71‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAT < 1:1642130/45‑1 ACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAA > 1:3496232/1‑36 CATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA > 1:5361373/1‑70 CATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTA > 1:3778320/1‑70 ATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAA < 1:7224885/71‑1 ATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGA < 1:429810/61‑1 ATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAA < 1:7665548/40‑1 TATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAA < 1:7264785/39‑1 TATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGAC < 1:4946861/37‑1 TATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGA > 1:76806/1‑36 TATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATG > 1:6722222/1‑35 ATCCATTTTGTCATTACGACAAAAGAAAAACATTTCACTTTGGATATGTTGTTGCCTGAAGGTAGTAATAACAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/3836415‑3836342‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAA > AP009048/3836371‑3836439 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |