| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3836342 = | 94 (1.150) | 10 (0.140) | 4/88 | NT | 10.8% | coding (95/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase |
| ? | AP009048 | 3836371 = | 80 (1.090) | coding (124/1110 nt) | rfaB | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑1, 6‑D‑galactosyltransferase | |||||
Only 100 of 140 total aligned reads displayed.
AGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAATA > AP009048/3836301‑3836441 | aGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACata > 1:5749708/1‑71 (MQ=255)aGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACata > 1:3651835/1‑71 (MQ=255) cTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAg < 1:6690027/70‑1 (MQ=255) gATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTg < 1:592145/69‑1 (MQ=255) gATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGa < 1:7136977/70‑1 (MQ=255) tGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATg < 1:5493725/70‑1 (MQ=255) tGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGt > 1:6024832/1‑71 (MQ=255) cggcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:2738368/1‑70 (MQ=255) gcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGtttt < 1:3063484/69‑1 (MQ=255) gcATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGtttt < 1:7939812/69‑1 (MQ=255) cATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCt > 1:5767377/1‑71 (MQ=255) aTGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGttt > 1:2590688/1‑66 (MQ=255) aTGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt > 1:3557556/1‑71 (MQ=255) aTGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCt > 1:5488949/1‑70 (MQ=255) tGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGt < 1:1156844/63‑1 (MQ=255) cTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTc > 1:3039237/1‑69 (MQ=255) cTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg > 1:82796/1‑70 (MQ=255) tcactttggatATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCg < 1:4938513‑M1/58‑1 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCaa > 1:4077446/1‑45 (MQ=255) gTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGtttt < 1:336673/58‑1 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCaaa > 1:252448/1‑43 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGa > 1:5302419/1‑71 (MQ=255) aTCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGa > 1:2211183/1‑71 (MQ=255) tCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTaa < 1:1852615/67‑1 (MQ=255) ccGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGt > 1:7933099/1‑64 (MQ=255) gTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGt < 1:4205182/62‑1 (MQ=255) ATGTTATTACTACCTTCAGGCAACAACATATCCaa < 1:7105320‑M1/35‑1 (MQ=255) ATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATg < 1:4519499‑M1/71‑1 (MQ=255) ATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATg < 1:1318203‑M1/71‑1 (MQ=255) TGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaaaa < 1:917799‑M1/68‑1 (MQ=255) GTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTa > 1:3376836‑M1/1‑58 (MQ=255) GTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACa > 1:569967‑M1/1‑64 (MQ=255) GTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGa < 1:1029507‑M1/71‑1 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGa > 1:3075457‑M1/1‑37 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGa > 1:2696879‑M1/1‑37 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGa > 1:5915264‑M1/1‑37 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt > 1:625342‑M1/1‑49 (MQ=255) TTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtt > 1:6888367‑M1/1‑49 (MQ=255) tgttgcctgaaggtagtaataacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt > 1:855998‑M2/26‑70 (MQ=255) TATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGa < 1:3631789‑M1/69‑1 (MQ=255) tactacCTTCAGGCAACAACATATCCAAAGTGAAATGttt < 1:7742183/40‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGttt < 1:2964678‑M2/18‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGttt < 1:656777‑M2/18‑1 (MQ=255) gcctgaaggtagtaataacatATCCAAAGTGAAATGttt < 1:6249394‑M2/18‑1 (MQ=255) actacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAgg > 1:1406097/1‑70 (MQ=255) ctacCTTCAGGCAACAACATATCCAAAGTGAAATGt < 1:7824150/36‑1 (MQ=255) ctacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTc < 1:4157755/48‑1 (MQ=255) ctacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATaa < 1:7856301/67‑1 (MQ=255) ctacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAggg < 1:1008686/70‑1 (MQ=255) tacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt < 1:4670776/60‑1 (MQ=255) tacCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt < 1:2846410/60‑1 (MQ=255) ctgaaggtagtaataacatATCCAAAGTGAAATGttttt > 1:6136217‑M2/20‑39 (MQ=255) ctgaaggtagtaataacatATCCAAAGTGAAATGttttt > 1:3295940‑M2/20‑39 (MQ=255) ctgaaggtagtaataacatATCCAAAGTGAAATGtttt > 1:6654432‑M2/20‑38 (MQ=255) acCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATa > 1:6025603/1‑64 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGttt < 1:2400382/35‑1 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGttt < 1:1336140/35‑1 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGa > 1:4343791/1‑52 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGa > 1:2249311/1‑52 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGAt < 1:1384600/69‑1 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATgg < 1:2815634/71‑1 (MQ=255) ccTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATgg > 1:3905926/1‑71 (MQ=255) cTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTc < 1:3154089/44‑1 (MQ=255) cTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTa < 1:2281937/47‑1 (MQ=255) cTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:736606/54‑1 (MQ=255) cTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:164018/54‑1 (MQ=255) ttCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt < 1:4689959/40‑1 (MQ=255) ttCAGGCAACAACATATCCAAAGTGAAATGTTTTTCtttt < 1:6361205/40‑1 (MQ=255) cAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGc > 1:1486974/1‑68 (MQ=255) cAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCt < 1:4994021/69‑1 (MQ=255) cAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTg > 1:2536027/1‑70 (MQ=255) aGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:1396770/50‑1 (MQ=255) aGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGAt < 1:2517988/64‑1 (MQ=255) aGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGAt < 1:4185690/64‑1 (MQ=255) ggCAACAACATATCCAAAGTGAAATGTTTTTCttt > 1:5444529/1‑35 (MQ=255) ggCAACAACATATCCAAAGTGAAATGTTTTTCttt > 1:7056302/1‑35 (MQ=255) caacaaCATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGAt < 1:2623811/54‑1 (MQ=255) aacaacATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAgg > 1:6836866/1‑70 (MQ=255) aacaacATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGt < 1:1737914/71‑1 (MQ=255) acaacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGt < 1:5601181/37‑1 (MQ=255) caacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGt < 1:1444530/36‑1 (MQ=255) caacaTATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGaa > 1:6786597/1‑66 (MQ=255) aacatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTAtt < 1:5005344‑M2/66‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTaa > 1:3496232‑M2/5‑36 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAAt < 1:1642130‑M2/41‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa < 1:2857594‑M2/67‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa < 1:240662‑M2/67‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa < 1:7341917‑M2/67‑1 (MQ=255) acatATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa < 1:2131365‑M2/67‑1 (MQ=255) catATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa > 1:5361373‑M2/4‑70 (MQ=255) catATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTa > 1:3778320‑M2/4‑70 (MQ=255) atATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:7665548‑M2/38‑1 (MQ=255) atATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGa < 1:429810‑M2/59‑1 (MQ=255) atATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTaaa < 1:7224885‑M2/69‑1 (MQ=255) tATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATg > 1:6722222‑M2/2‑35 (MQ=255) tATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGa > 1:76806‑M2/2‑36 (MQ=255) tATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGAc < 1:4946861‑M2/36‑1 (MQ=255) tATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACaa < 1:7264785‑M2/38‑1 (MQ=255) atCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAATa > 1:4897612/1‑71 (MQ=255) atCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAATa > 1:5814904/1‑71 (MQ=255) | AGCTGTTTCTGGATTTGGCGGCATGGAAACTGTCATCCGTGATGTTATTACTACCTTCAGGCAACAACATATCCAAAGTGAAATGTTTTTCTTTTGTCGTAATGACAAAATGGATAAGGGATGGCTGGAAGGTATTAAATA > AP009048/3836301‑3836441 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |