| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 3956607 | 71 (0.870) | 5 (0.080) | 4/80 | NT | 6.8% | coding (1772/1950 nt) | yhjK | predicted diguanylate cyclase |
| ? | AP009048 | = 3956617 | 80 (1.200) | coding (1782/1950 nt) | yhjK | predicted diguanylate cyclase | |||||
TGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3956532‑3956607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatgatAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCG < AP009048/3956617‑3956548 TGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAG > 1:6839699/1‑70TGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAG < 1:6560079/70‑1TGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATCTTTGTTGAAGGCTTGCCGGGAGATAGCAG < 1:4966579/70‑1 AATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCGTG < 1:4790947/71‑1 AATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCAT > 1:4926739/1‑70 ATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGTAGATAGCAGCATG < 1:5677145/70‑1 TCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGAT > 1:2925604/1‑71 TACTTAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCA < 1:3128484/48‑1 ACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGC < 1:6962392/49‑1 ACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGC < 1:6953550/49‑1 CTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGAT > 1:4447828/1‑53 GAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAG > 1:4951581/1‑45 GAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCA > 1:1631357/1‑44 GAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCA > 1:6894530/1‑44 ATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATAATTGCAGCAATCATG < 1:4369446/63‑1 GACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCAT < 1:2148425/41‑1 GTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATAATTGCAGCAAT < 1:2189826/48‑1 TTGAAGGCTTGCCGGGAGATAGCAGCATGATAATTGCAGCAATCAT < 1:1914726/46‑1 GAAGGCTTGCCGGGAGATAGCAGCATGATAATTGCAGCAATCATGC > 1:4115063/1‑46 GAAGGCTTGCCGGGAGATAGCAGCATGATAATTGCAGCAATCATGC > 1:1424831/1‑46 AGCATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAG > 1:2473709/1‑71 AGCATGATAATTGCAGCAATCATGCTGCTATCTCCCAGCAAGCCTTCAACAAACATTTTGTCGATTTTCA < 1:767669/70‑1 GCATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAG > 1:412422/1‑70 GCATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAG > 1:6476753/1‑70 GCATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTC > 1:5252047/1‑46 GCATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTC > 1:2167331/1‑46 CATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTA < 1:7467384/71‑1 ATGATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTC > 1:2649748/1‑66 GATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGT > 1:6424263/1‑71 GATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGT > 1:5115416/1‑71 GATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACG > 1:4765485/1‑70 ATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTC < 1:5732302/71‑1 ATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTC < 1:1738422/71‑1 ATAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTC < 1:5723372/71‑1 TAATTGCAGCTATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTC > 1:7420677/1‑70 TAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCG < 1:7176758/71‑1 TAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACAT < 1:6479945/49‑1 TGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/3956532‑3956607‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcatgatAATTGCAGCAATCATGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCG < AP009048/3956617‑3956548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |