| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 4047710 = | 122 (1.500) | 5 (0.070) | 3/86 | NT | 5.0% | intergenic (+19/‑380) | livF/ugpB | leucine/isoleucine/valine transporter subunit/glycerol‑3‑phosphate transporter subunit |
| ? | AP009048 | 4047726 = | 81 (1.130) | intergenic (+35/‑364) | livF/ugpB | leucine/isoleucine/valine transporter subunit/glycerol‑3‑phosphate transporter subunit | |||||
CCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4047785‑4047710‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAA > AP009048/4047726‑4047795 CCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTG < 1:4954110/71‑1 CCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGA < 1:1371693/71‑1 CAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGAC < 1:2719577/71‑1 AGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACT > 1:517108/1‑71 TAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCC < 1:1102764/71‑1 TAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCC < 1:4544990/71‑1 GGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTC > 1:2692896/1‑68 GATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCC > 1:6218132/1‑64 AGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTG > 1:6173717/1‑42 AGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTG > 1:3933898/1‑42 ATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACT < 1:3341779/40‑1 TTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGA < 1:2547915/37‑1 TTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGA > 1:5427020/1‑35 TTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGA > 1:5103261/1‑35 AAAGGAGTCTTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTGC < 1:3820498/48‑1 AAAGGAGTCTTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTG < 1:4491324/47‑1 AAGGAGTCTTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTG > 1:6998924/1‑58 AAGGAGTCTTTTGACTCCTTTGAGACAGGTGACAAATGTAAAA > 1:1062748/1‑43 AAGGAGTCTTTTGACTCCTTTGAGACAGGTGACAAATGTAAAA > 1:5748499/1‑43 TTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCC < 1:3990583/40‑1 TTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCC < 1:2077699/40‑1 TTTTGACTCCTTTGAGACAGGTGACAAATGTAAAATTGCC < 1:1668971/40‑1 GACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGT < 1:389430/71‑1 GACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCG < 1:1438216/43‑1 ACTCCTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTG < 1:1987042/71‑1 CTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAA > 1:2819556/1‑71 CTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGC < 1:224130/69‑1 CTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGC < 1:937458/69‑1 CTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTAT > 1:1626114/1‑48 CTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTT < 1:3603557/46‑1 CCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AP009048/4047785‑4047710‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactccTTTGAGACAGGTGACAAATGTAAAATTGCCTGATGCGCTGCGCTTATCAGGCCTACTGGGTGAGTGGCAA > AP009048/4047726‑4047795 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |