| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 4627296 | 110 (1.350) | 5 (0.070) | 3/92 | NT | 5.0% | coding (848/1332 nt) | yjjJ | predicted DNA‑binding transcriptional regulator |
| ? | AP009048 | = 4627312 | 85 (1.110) | coding (864/1332 nt) | yjjJ | predicted DNA‑binding transcriptional regulator | |||||
CATCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4627225‑4627296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < AP009048/4627312‑4627244 CATCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAG < 1:2789687/71‑1CATCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAG < 1:5492542/71‑1 TCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGG > 1:1437357/1‑70 TCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGG > 1:1473125/1‑70 TAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGGCAAGCGACCATCGTTACCTTTGCAGT < 1:3085999/71‑1 TAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGGCAAGCGACCATCGTTACCTTTGCAGT < 1:7911412/71‑1 AGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGGCAAGCGACCATCGTTACCT > 1:2659426/1‑60 GAAGCGGAACGCTTTGACTGCAAAGGCAAGCGACCATCGTTACCT < 1:3705010/45‑1 GAAGCGGAACGCTTTGACTGCAAAGGCAAGCGACCATCGTTACCT < 1:3911946/45‑1 AGGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGG > 1:197020/1‑49 GGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < 1:1846645/71‑1 GGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < 1:2362468/71‑1 GGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < 1:2882676/71‑1 GGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < 1:4420650/71‑1 GGCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTA > 1:6921850/1‑70 CATCGAGTCAACGGTGCTTGTAACAAGTAACAGGCAGGTATTCCTCGAAGCGGAACGCTTTGACTGCAAAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > AP009048/4627225‑4627296‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggCAAGCGACCATCGTTACCTTTGCAGTCAAAGCGTTCCGCTTCGAGGAATACCTGCCTGTTACTTGTTAC < AP009048/4627312‑4627244 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |