| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 2483112 | 55 (0.680) | 7 (0.100) | 3/88 | NT | 11.2% | intergenic (‑37/‑181) | dsdC/dsdX | DNA‑binding transcriptional dual regulator/predicted transporter |
| ? | AP009048 | = 2483124 | 62 (0.850) | intergenic (‑49/‑169) | dsdC/dsdX | DNA‑binding transcriptional dual regulator/predicted transporter | |||||
GCAGCCGATTTCTTATTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATGTAAA > AP009048/2483042‑2483182 | gcagcCGATTTCTTATTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGC > 1:4447665‑M1/1‑71 (MQ=255) ccGATTTCTTATTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGc > 1:2404687/1‑70 (MQ=255) tATTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAg < 1:7561460‑M2/71‑2 (MQ=255) aTTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTc < 1:7407625/68‑1 (MQ=255) tttCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgc < 1:1070127‑M2/70‑3 (MQ=255) tttCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgc < 1:3433578‑M2/70‑3 (MQ=255) tttCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGAGGCAAAATTTCa < 1:1311886/68‑1 (MQ=255) tCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgcta > 1:991560‑M2/1‑66 (MQ=255) cGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCg > 1:2319569/1‑52 (MQ=255) cGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgctat < 1:1516507‑M2/68‑6 (MQ=255) gAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgctat < 1:5051189‑M2/67‑6 (MQ=255) gAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgcta < 1:3386264‑M2/66‑5 (MQ=255) aaGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCg > 1:3457926/1‑50 (MQ=255) aaGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat < 1:2315354/71‑1 (MQ=255) aGGGGTTCCATAATCACGTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:6260656/1‑70 (MQ=255) aGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:4284730/1‑70 (MQ=255) aGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:5708103/1‑70 (MQ=255) aGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:519736/1‑70 (MQ=255) tCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTa > 1:7017078/1‑70 (MQ=255) ccATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCtgaaattttgccgctat < 1:3808258‑M1/58‑18 (MQ=255) ccATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCtgaaattttgccgctat < 1:6103805‑M1/58‑18 (MQ=255) cATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgctat < 1:6258856‑M2/57‑6 (MQ=255) cATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTaaa < 1:2556916/70‑1 (MQ=255) aTAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCtgaaattttgccgctattt > 1:4109564‑M1/1‑39 (MQ=255) aTAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAAttt > 1:6322451/1‑49 (MQ=255) tAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGt > 1:3783641/1‑70 (MQ=255) tAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTg < 1:3928192/71‑1 (MQ=255) aTCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAg < 1:5715649‑M2/49‑2 (MQ=255) aTCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGaa > 1:7624826/1‑71 (MQ=255) aTCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGaa > 1:6253471/1‑71 (MQ=255) tCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAAc < 1:4884722/71‑1 (MQ=255) aCCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCa < 1:2306756/71‑1 (MQ=255) ccTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatg < 1:7006101/50‑1 (MQ=255) ccTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCat < 1:5756118/71‑1 (MQ=255) ccTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCat < 1:106875/71‑1 (MQ=255) cTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCata > 1:1393116/1‑71 (MQ=255) cTCATTTTTCGCTTAAGTGTAAAAAAATAGCGACAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCata > 1:2095165/1‑71 (MQ=255) tCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgag > 1:3812424/1‑50 (MQ=255) cATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATAtc > 1:6224853/1‑71 (MQ=255) cATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATAtc > 1:3238869/1‑71 (MQ=255) aTTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCatat > 1:7093826/1‑69 (MQ=255) aTTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATAtct > 1:2602470/1‑71 (MQ=255) aTTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATAtc > 1:4322412/1‑70 (MQ=255) tttttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTc > 1:1853500/1‑38 (MQ=255) tttttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTc > 1:988804/1‑38 (MQ=255) tttttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatga < 1:1885080/46‑1 (MQ=255) ttttCGCTTAAGTGTAAAAAAATAGCtgaaattttgccg > 1:5170368‑M1/1‑26 (MQ=255) ttttCGCTTAAGTGTAAAAAAATAGCtgaaattttgccg > 1:551677‑M1/1‑26 (MQ=255) ttttCGCTTAAGTGTAAAAAAATAGCtgaaattttgccg > 1:4440603‑M1/1‑26 (MQ=255) ttttCGCTTAAGTGTAAAAAAATAGCtgaaattttgc > 1:7001873‑M1/1‑26 (MQ=255) ttttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATAtctc > 1:4408808/1‑70 (MQ=255) tttCGCTTAAGTGTAAAAAAATAGCGGCAAAAttt > 1:3806219/1‑35 (MQ=255) tttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCa > 1:6183275/1‑37 (MQ=255) ttCTCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCat < 1:2858352/63‑1 (MQ=255) ttCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCa < 1:7229019/69‑1 (MQ=255) tCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:435881/1‑45 (MQ=255) tCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgagat > 1:5011711/1‑45 (MQ=255) tCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAAtt > 1:154632/1‑71 (MQ=255) cGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAgctat > 1:3702939‑M2/1‑34 (MQ=255) cTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTatgaga < 1:448516/41‑1 (MQ=255) ttAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCAcc > 1:3781098/1‑71 (MQ=255) tAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCt > 1:796752/1‑71 (MQ=255) aaaaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:7660781/1‑70 (MQ=255) aaaaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:3352917/1‑70 (MQ=255) aaaaaaTAGCGGAAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:2788060/1‑70 (MQ=255) aaaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCatat > 1:7818012/1‑50 (MQ=255) aaaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:1558106/1‑69 (MQ=255) aaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCat < 1:6489852/47‑1 (MQ=255) aaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCat < 1:3679949/47‑1 (MQ=255) aaaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:7925455/1‑68 (MQ=255) aaaTAGCGGCAAAATTTCAgctatttttttacacttaagcgaaaaatgaggtgattat > 1:4109564‑M2/1‑19 (MQ=255) aaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGt > 1:4235865/1‑39 (MQ=255) aaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGt > 1:7310446/1‑39 (MQ=255) aaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGt > 1:2518172/1‑39 (MQ=255) aaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:7855846/1‑67 (MQ=255) aaaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCAtttt > 1:5570421/1‑67 (MQ=255) aaTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGAt < 1:759601/71‑1 (MQ=255) aTAGCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttcg < 1:1516507‑M1/68‑64 (MQ=255) aTAGCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttc < 1:5051189‑M1/67‑63 (MQ=255) aTAGCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatg < 1:6258856‑M1/57‑53 (MQ=255) aTAGCtgaaattttgccgctatttttttacacttaagcg > 1:3702939‑M1/1‑5 (MQ=255) aTAGCGGCAAAATTTCAgctatttttttacacttaagcgaaaaatgaggtgattatgg < 1:6103805‑M2/58‑42 (MQ=255) aTAGCGGCAAAATTTCAgctatttttttacacttaagcgaaaaatgaggtgattatgg < 1:3808258‑M2/58‑42 (MQ=255) aTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATg > 1:6758587/1‑71 (MQ=255) aTAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATg > 1:400737/1‑71 (MQ=255) tAGCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttcgtga > 1:991560‑M1/1‑4 (MQ=255) tAGCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttc < 1:3386264‑M1/66‑63 (MQ=255) aGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAAtt < 1:5063782/51‑1 (MQ=255) aGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATGt > 1:7481390/1‑70 (MQ=255) gCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttcgtgaaa < 1:1070127‑M1/70‑69 (MQ=255) gCtgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttcgtgaaa < 1:3433578‑M1/70‑69 (MQ=255) ctgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgattatggaaccccttcgtgaaata < 1:7561460‑M1/71‑71 (MQ=255) ctgaaattttgccgctatttttttacacttaagcgaaaaatgaggtgat < 1:5715649‑M1/49‑49 (MQ=255) cGGCAAAATTTCAgctatttttttacacttaagcgaaaa > 1:551677‑M2/1‑13 (MQ=255) cGGCAAAATTTCAgctatttttttacacttaagcgaaaa > 1:5170368‑M2/1‑13 (MQ=255) cGGCAAAATTTCAgctatttttttacacttaagcgaaaa > 1:4440603‑M2/1‑13 (MQ=255) cGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATGTaaa < 1:2305930/71‑1 (MQ=255) | GCAGCCGATTTCTTATTTCACGAAGGGGTTCCATAATCACCTCATTTTTCGCTTAAGTGTAAAAAAATAGCGGCAAAATTTCAGCTATGAGATGAGCTAAAGTGAACCATATCTCAATTCACCTTCATTTTTAGATGTAAA > AP009048/2483042‑2483182 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |