New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 3396397101 (1.240)8 (0.100) 3/96 NT 7.3% coding (1254/1470 nt) rng ribonuclease G
?AP009048 = 3396428 103 (1.290)coding (1223/1470 nt) rng ribonuclease G

Only 100 of 126 total aligned reads displayed.

CCAGGAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCT  >  AP009048/3396327‑3396465
                                                                      |                                                                    
ccAGGAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTT                                                                      >  1:2866577‑M1/1‑71 (MQ=255)
 cAGGAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGttt                                                                     >  1:710804/1‑71 (MQ=255)
   ggAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTc                                                                    >  1:7650680/1‑70 (MQ=255)
   ggAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTc                                                                    >  1:6300316/1‑70 (MQ=255)
    gAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCa                                                                  >  1:350319/1‑71 (MQ=255)
     aaaCGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCAc                                                                 >  1:3311766/1‑71 (MQ=255)
      aaCGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACg                                                                >  1:1432800/1‑71 (MQ=255)
      aaCGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACg                                                                >  1:6430284/1‑71 (MQ=255)
          gTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGttt                                                            <  1:6211412/71‑1 (MQ=255)
           tCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           >  1:1198834/1‑71 (MQ=255)
           tCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           <  1:588540/71‑1 (MQ=255)
            cGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           >  1:240062/1‑70 (MQ=255)
            cGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           >  1:6175230/1‑70 (MQ=255)
              gAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAc                                                        <  1:7173579/71‑1 (MQ=255)
              gAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAc                                                        >  1:2997918/1‑71 (MQ=255)
               aGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAcc                                                       >  1:4216522/1‑71 (MQ=255)
               aGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAcc                                                       >  1:4796135/1‑71 (MQ=255)
                gTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGttt                                                                     >  1:6831076/1‑56 (MQ=255)
                 tCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           >  1:1724873/1‑65 (MQ=255)
                 tCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGt                                                     <  1:3563266/71‑1 (MQ=255)
                   gTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCa                                                         >  1:1072896/1‑65 (MQ=255)
                    tAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTcc                                                  <  1:1075584/71‑1 (MQ=255)
                    tAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTcc                                                  <  1:3633005/71‑1 (MQ=255)
                      aGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCcgc                                                >  1:425216/1‑71 (MQ=255)
                       gCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCAc                                                                 <  1:2445752/53‑1 (MQ=255)
                        cATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGa                                              <  1:3290774/71‑1 (MQ=255)
                          tggtggACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGAcc                                            <  1:2655356/71‑1 (MQ=255)
                           ggtggACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCg                                           >  1:1487090/1‑71 (MQ=255)
                            gtggACACGAACAATCTCGCGCATGATTTCATAGCATTCCGTTTCCACGGTTTTCACCGTTCCGCGACCg                                           <  1:5012590/70‑1 (MQ=255)
                            gtggACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCg                                           <  1:7324645/70‑1 (MQ=255)
                            gtggACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACAGTTTTCACCGTTCCGCGACCg                                           <  1:7407060/70‑1 (MQ=255)
                               gACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCcgc                                                >  1:3213855/1‑62 (MQ=255)
                                 cacGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAg                                     <  1:3493494/71‑1 (MQ=255)
                                  acGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGt                                                     <  1:3490921/54‑1 (MQ=255)
                                  acGAACAATCTC‑CGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGt                                                     <  1:442196/53‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTc                                                          <  1:3872793/48‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTc                                                          <  1:5958270/48‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTc                                                          <  1:6230914/48‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTc                                                          <  1:7215551/48‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                   <  1:2552952/71‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                   <  1:6155198/71‑1 (MQ=255)
                                   cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                   <  1:4217210/71‑1 (MQ=255)
                                    gAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTc                                                   >  1:3229440/1‑54 (MQ=255)
                                    gAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTc                                                   >  1:6620924/1‑54 (MQ=255)
                                    gAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                   >  1:1377637/1‑70 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAcc                                                       >  1:610892/1‑49 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAcc                                                       >  1:7934464/1‑49 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTg                                         >  1:6642148/1‑63 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTg                                         >  1:414202/1‑63 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTg                                         >  1:3391496/1‑63 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                 <  1:3755644/71‑1 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                 <  1:2176090/71‑1 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                 <  1:2431268/71‑1 (MQ=255)
                                     aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                 <  1:6025125/71‑1 (MQ=255)
                                      aCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCAc                                                        >  1:894888/1‑47 (MQ=255)
                                         aTCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGtt                                                    <  1:6320801/48‑1 (MQ=255)
                                           ctcGCGCATGATTTCATAGCATACCGTTTCCACGGtttt                                                           <  1:2049053/39‑1 (MQ=255)
                                              gcgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAtt                           <  1:2765952/68‑1 (MQ=255)
                                              gcgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGt                        >  1:4800204/1‑71 (MQ=255)
                                              gcgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGt                        >  1:1120487/1‑71 (MQ=255)
                                               cgcATGATTTCATAGCATACCGTTgccacggtcgcggaacggtgaaaaccgt                                          <  1:3586897‑M1/52‑29 (MQ=255)
                                               cgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAtt                           >  1:5248622/1‑67 (MQ=255)
                                               cgcATGATTTCATAGCATAACGTTTCCACGGTTTTCACCGt                                                     >  1:4626609/1‑41 (MQ=255)
                                                gcATGATTTCATAGCATACCGTTgccacggtcgcggaacggtgaaaaccgt                                          <  1:1586117‑M1/51‑29 (MQ=255)
                                                 cATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGAcc                                            >  1:4947409/1‑48 (MQ=255)
                                                  aTGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    <  1:2706970/71‑1 (MQ=255)
                                                   tGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGc                                       <  1:4303875/51‑1 (MQ=255)
                                                   tGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGc                                       <  1:2203429/51‑1 (MQ=255)
                                                   tGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    >  1:2215934/1‑70 (MQ=255)
                                                    gATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTggg                               <  1:3220120/58‑1 (MQ=255)
                                                    gATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    >  1:5825367/1‑69 (MQ=255)
                                                     aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                  <  1:5554378/70‑1 (MQ=255)
                                                     aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                  >  1:4460987/1‑70 (MQ=255)
                                                     aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAg                 >  1:1616401/1‑71 (MQ=255)
                                                     aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAg                 >  1:5031853/1‑71 (MQ=255)
                                                      tttCATAGCATACCGTTgccacggtcgcggaacggtgaaaacc                                            <  1:6472129‑M1/43‑27 (MQ=255)
                                                      tttCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGt                <  1:1906531/71‑1 (MQ=255)
                                                        tCATAGCATACCGTTgccacggtcgcggaacggtgaaaaccgt                                          >  1:7143115‑M1/1‑15 (MQ=255)
                                                        tCATAGCATACCGTTgccacggtcgcggaacggtgaaaaccgt                                          >  1:6754193‑M1/1‑15 (MQ=255)
                                                        tCATAGCATACCGTTgccacggtcgcggaacggtgaaaaccgt                                          >  1:3996460‑M1/1‑15 (MQ=255)
                                                        tCATAGCATACCGTTgccacggtcgcggaacggtgaaaa                                              >  1:4196547‑M1/1‑15 (MQ=255)
                                                        tCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTAc              >  1:552880/1‑71 (MQ=255)
                                                         cATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTgg                                >  1:84630/1‑52 (MQ=255)
                                                         cATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTgg                                >  1:6769255/1‑52 (MQ=255)
                                                         cATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTAc              <  1:2344045/70‑1 (MQ=255)
                                                          aTAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAtt                           <  1:2447771/56‑1 (MQ=255)
                                                          aTAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGt            <  1:5076327/71‑1 (MQ=255)
                                                            aGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTacac                   <  1:7601521/62‑1 (MQ=255)
                                                            aGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTacac                   <  1:1400401/62‑1 (MQ=255)
                                                             gCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCt         <  1:3183693/71‑1 (MQ=255)
                                                               aTACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTa               >  1:4574268/1‑63 (MQ=255)
                                                               aTACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTa               >  1:3607554/1‑63 (MQ=255)
                                                                 aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCGTTCGTTACACAGTACGTGCTCAAt     >  1:3219400/1‑71 (MQ=255)
                                                                 aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    <  1:5974109/56‑1 (MQ=255)
                                                                 aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    <  1:7430291/56‑1 (MQ=255)
                                                                 aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    <  1:1104404/56‑1 (MQ=255)
                                                                 aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                    <  1:249980/56‑1 (MQ=255)
                                                                  ccGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAAt     >  1:1899947/1‑70 (MQ=255)
                                                                  ccGTTTCCACGGGTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAAt     >  1:1518726/1‑70 (MQ=255)
                                                                    gTTTCCACGGTTTTCACCGTTCCGCGCCCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCt  >  1:3673203/1‑71 (MQ=255)
                                                                      |                                                                    
CCAGGAAACGGTCGGAGTCGTAAGCATGGTGGACACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCT  >  AP009048/3396327‑3396465

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.