New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? AP009048 = 3396397101 (1.240)8 (0.100) 3/96 NT 7.3% coding (1254/1470 nt) rng ribonuclease G
?AP009048 = 3396428 103 (1.290)coding (1223/1470 nt) rng ribonuclease G

Only 100 of 136 total aligned reads displayed.

CACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCATCTCCACC  >  AP009048/3396360‑3396496
                                                                    |                                                                    
cacGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAg                                                                    <  1:3493494/71‑1 (MQ=255)
  cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                                                  <  1:6155198/71‑1 (MQ=255)
  cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                                                  <  1:4217210/71‑1 (MQ=255)
  cGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                                                  <  1:2552952/71‑1 (MQ=255)
   gAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGtt                                                                 <  1:2490460/71‑1 (MQ=255)
   gAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGt                                                                  >  1:1377637/1‑70 (MQ=255)
    aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                                                <  1:6025125/71‑1 (MQ=255)
    aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                                                <  1:2176090/71‑1 (MQ=255)
    aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                                                <  1:2431268/71‑1 (MQ=255)
    aaCAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTg                                                                >  1:712217/1‑71 (MQ=255)
         tctcGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAt                                                           >  1:4243785/1‑71 (MQ=255)
          ctcGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAt                                                           >  1:1159166/1‑70 (MQ=255)
           tcGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTc                                                         >  1:2357010/1‑71 (MQ=255)
             gcgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCAtt                                                          <  1:2765952/68‑1 (MQ=255)
             gcgcATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGt                                                       >  1:1120487/1‑71 (MQ=255)
             gcgcATGATTTCATAGAATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAgg                                                                   >  1:7382608/1‑59 (MQ=255)
                 aTGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:1619992/71‑1 (MQ=255)
                 aTGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:2706970/71‑1 (MQ=255)
                  tGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGc                                                                      <  1:2203429/51‑1 (MQ=255)
                   gATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTggg                                                              <  1:3220120/58‑1 (MQ=255)
                    aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                                                 >  1:4460987/1‑70 (MQ=255)
                    aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAg                                                <  1:407419/71‑1 (MQ=255)
                    aTTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAg                                                >  1:1616401/1‑71 (MQ=255)
                     tttCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGt                                               <  1:1906531/71‑1 (MQ=255)
                        cATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTgg                                                               >  1:6769255/1‑52 (MQ=255)
                        cATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTAc                                             <  1:2344045/70‑1 (MQ=255)
                         aTAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACg                                            <  1:3572726/70‑1 (MQ=255)
                         aTAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGt                                           <  1:5076327/71‑1 (MQ=255)
                           aGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTacac                                                  <  1:1400401/62‑1 (MQ=255)
                            gCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCt                                        <  1:3183693/71‑1 (MQ=255)
                                aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCGTTCGTTACACAGTACGTGCTCAAt                                    >  1:3219400/1‑71 (MQ=255)
                                aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:1104404/56‑1 (MQ=255)
                                aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:5974109/56‑1 (MQ=255)
                                aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:249980/56‑1 (MQ=255)
                                aCCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:7430291/56‑1 (MQ=255)
                                 ccGTTTCCACGGGTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAAt                                    >  1:1518726/1‑70 (MQ=255)
                                  cGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                                                 >  1:3680507/1‑56 (MQ=255)
                                   gTTTCCACGGTTTTCACCGTTCCGCGCCCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCt                                 >  1:3673203/1‑71 (MQ=255)
                                     ttCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTacac                                                  >  1:4462108/1‑52 (MQ=255)
                                      tCCACGGTTTTCACCGTTGCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTc                              >  1:5566074/1‑71 (MQ=255)
                                      tCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTc                              >  1:622423/1‑71 (MQ=255)
                                       ccACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTc                              <  1:2933615/70‑1 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatgaaatcatgcg                                              <  1:3586897‑M2/52‑25 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatgaaatcatgc                                               <  1:1586117‑M2/51‑24 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatga                                                       >  1:3996460‑M2/1‑28 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatga                                                       >  1:6754193‑M2/1‑28 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatga                                                       >  1:7143115‑M2/1‑28 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGt                                               <  1:2739250/51‑1 (MQ=255)
                                         aCGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcgcg                           >  1:6957655/1‑71 (MQ=255)
                                          cGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTaca                                                   <  1:1548316/46‑1 (MQ=255)
                                          cGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCgg                          <  1:1799408/71‑1 (MQ=255)
                                          cGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCgg                          <  1:7924143/71‑1 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCaacggtatgctatgaaa                                                     <  1:4856776‑M2/43‑18 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGt                                           <  1:5548964/53‑1 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCggg                         >  1:6970372/1‑71 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCggg                         >  1:4359710/1‑71 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCggg                         >  1:3293027/1‑71 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCggg                         <  1:2518139/71‑1 (MQ=255)
                                           ggTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCgg                          <  1:1831992/70‑1 (MQ=255)
                                            gTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGt                                           <  1:6431489/52‑1 (MQ=255)
                                            gTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGt                        <  1:2424044/71‑1 (MQ=255)
                                             ttttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCgg                          <  1:7615196/68‑1 (MQ=255)
                                             ttttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTg                       >  1:1471958/1‑71 (MQ=255)
                                              tttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:2867197/1‑64 (MQ=255)
                                              tttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGc                      >  1:4958295/1‑71 (MQ=255)
                                               ttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCt                                 <  1:797598/59‑1 (MQ=255)
                                               ttCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCg                     >  1:4634014/1‑71 (MQ=255)
                                                tCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTg                                          >  1:45341/1‑49 (MQ=255)
                                                tCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTg                                          >  1:4380264/1‑49 (MQ=255)
                                                tCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCg                     <  1:2609704/70‑1 (MQ=255)
                                                 cACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCttt                               >  1:4366038/1‑59 (MQ=255)
                                                 cACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcgc                            >  1:884973/1‑62 (MQ=255)
                                                 cACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGtt                   >  1:6850796/1‑71 (MQ=255)
                                                 cACCGTTCCGCGACCGTGGAAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGtt                   <  1:5030441/71‑1 (MQ=255)
                                                  aCCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGttt                  <  1:3421200/71‑1 (MQ=255)
                                                  aCCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGtt                   >  1:1979026/1‑70 (MQ=255)
                                                   ccGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCaa                                     >  1:971106/1‑51 (MQ=255)
                                                   ccGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCaa                                     >  1:1956466/1‑51 (MQ=255)
                                                    cGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTAc                >  1:5814518/1‑71 (MQ=255)
                                                    cGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTAc                >  1:7574671/1‑71 (MQ=255)
                                                    cGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTAc                >  1:284876/1‑71 (MQ=255)
                                                      ttCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGt                                               <  1:4254912/38‑1 (MQ=255)
                                                      ttCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTAcgc              >  1:2536139/1‑71 (MQ=255)
                                                       tCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                                                 >  1:5782384/1‑35 (MQ=255)
                                                       tCCGCGACCGTGGCAGGTTGGGCATTCGTTAcaca                                                 >  1:5464078/1‑35 (MQ=255)
                                                        ccGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACg                                            <  1:4590371/39‑1 (MQ=255)
                                                        ccGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTAcgcg             <  1:1252792/70‑1 (MQ=255)
                                                        ccGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGt            >  1:2258991/1‑71 (MQ=255)
                                                            gACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCAtc        >  1:5304685/1‑71 (MQ=255)
                                                               cGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcgcg                           <  1:5151593/49‑1 (MQ=255)
                                                                 tGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCa          <  1:2898847/64‑1 (MQ=255)
                                                                 tGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCATCTccac   >  1:359489/1‑71 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCtt                                <  1:4096694/41‑1 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:524239/1‑44 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:2185987/1‑44 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:6082773/1‑44 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:3072911/1‑44 (MQ=255)
                                                                  ggCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTcg                             >  1:5550193/1‑44 (MQ=255)
                                                                   gCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCATCTccacc  <  1:7132471/70‑1 (MQ=255)
                                                                   acAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCATCTccacc  <  1:5517471/69‑1 (MQ=255)
                                                                    |                                                                    
CACGAACAATCTCGCGCATGATTTCATAGCATACCGTTTCCACGGTTTTCACCGTTCCGCGACCGTGGCAGGTTGGGCATTCGTTACACAGTACGTGCTCAATGCTTTCGCGGGTGCGTTTACGCGTCATCTCCACC  >  AP009048/3396360‑3396496

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.