| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | 3563016 = | 50 (0.610) | 5 (0.070) | 4/84 | NT | 7.9% | intergenic (‑74/‑94) | yihV/yihU | predicted sugar kinase/predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain |
| ? | AP009048 | 3563049 = | 74 (1.060) | intergenic (‑107/‑61) | yihV/yihU | predicted sugar kinase/predicted oxidoreductase with NAD(P)‑binding Rossmann‑fold domain | |||||
CATTCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGA > AP009048/3562946‑3563085 | cATTCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAtt > 1:173998/1‑71 (MQ=255) aTTCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAtt < 1:2823842/70‑1 (MQ=255) ttCCTTAAACATTTTGGTATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAtttt < 1:7692897/71‑1 (MQ=255) ttCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAtttt > 1:4053846/1‑71 (MQ=255) ttCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAtttt < 1:4164947/71‑1 (MQ=255) ctgccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtt > 1:2592380‑M1/69‑70 (MQ=255) ctgccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtt > 1:2777364‑M1/69‑70 (MQ=255) ctgccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtt > 1:4955494‑M1/69‑70 (MQ=255) ctgccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtt > 1:7497740‑M1/69‑70 (MQ=255) ccTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAttttt < 1:2159696/70‑1 (MQ=255) ccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgttttt > 1:6493475‑M1/66‑70 (MQ=255) ccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgttttt > 1:2072408‑M1/66‑70 (MQ=255) ccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgttttt < 1:1342896‑M1/5‑1 (MQ=255) ccataaccctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgTTTTTg > 1:4254207‑M1/66‑71 (MQ=255) cTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAATTGACAGCCGTCACtttttaa < 1:2923082/71‑3 (MQ=37) ttAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGa > 1:5505014/1‑71 (MQ=255) aaaCATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGAc > 1:6187305/1‑70 (MQ=255) aCATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTg < 1:1607223/66‑1 (MQ=255) aCATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAA‑TTTTTGACGATa < 1:6509355/71‑1 (MQ=255) ctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtttt < 1:4203080‑M1/4‑1 (MQ=255) ctctcctgaatacagttatgtcactttttgtcatttatgacatgctttgcttgtctgtttt < 1:405933‑M1/4‑1 (MQ=255) tttGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAAt > 1:2268714/1‑71 (MQ=255) gggATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTa < 1:2916490/70‑1 (MQ=255) gATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACaa < 1:5383937/71‑1 (MQ=255) gATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACa > 1:7149748/1‑70 (MQ=255) gCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATa > 1:6010263/1‑71 (MQ=255) gTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGTTAAATTACAAATAc > 1:7416473/1‑70 (MQ=255) gTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAAt < 1:5045840/61‑1 (MQ=255) gTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATAc > 1:5949799/1‑70 (MQ=255) ttCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAAttttt < 1:2881218/49‑1 (MQ=255) ttCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAAt < 1:6465504/67‑1 (MQ=255) tCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGAt > 1:5965155/1‑55 (MQ=255) tCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGAt > 1:4020746/1‑55 (MQ=255) cATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGAt > 1:5057110/1‑70 (MQ=255) cATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGAt < 1:6523584/70‑1 (MQ=255) ttatgtcactttttgtcatttatgacatgctttgcttgtctgtttt > 1:6387729‑M1/43‑46 (MQ=255) aTTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATc > 1:6030535/1‑70 (MQ=255) aTTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATc > 1:4384139/1‑70 (MQ=255) ttttAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTg < 1:5806366/47‑1 (MQ=255) atgtcactttttgtcatttatgacatgctttgcttgtctgTTTTTGACGATAAATTACAAATACGATCaa > 1:1208463‑M1/41‑70 (MQ=255) ttAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTAc > 1:1755924/1‑57 (MQ=255) tgtcactttttgtcatttatgacatgctttgcttgtctgTTTTTGACGATAAATTACAAATACGATCaaa > 1:7382945‑M1/40‑70 (MQ=255) tcactttttgtcatttatgacatgctttgcttgtctgTTTTTGACGATAAATTACAAATACGATCaaaaa > 1:2120956‑M1/38‑70 (MQ=255) aTTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCaaaaa > 1:3613282/1‑69 (MQ=255) aTTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCaaaaa < 1:1536522/69‑1 (MQ=255) ttCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGa > 1:905945/1‑71 (MQ=255) aCCAATTGTTTAAAAAGTGACGGCTGTCAAttttt > 1:1368044/1‑35 (MQ=255) aaTTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACaaa < 1:283402/49‑1 (MQ=255) aTTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATaa < 1:6106822/40‑1 (MQ=255) aTTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCaaaaa > 1:6009959/1‑60 (MQ=255) ttGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGa < 1:3426374/63‑1 (MQ=255) ttGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagca > 1:1624811/1‑69 (MQ=255) gTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaag < 1:2835560/70‑1 (MQ=255) tttAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaagca > 1:142839/1‑71 (MQ=255) tttAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaagca < 1:7201492/71‑1 (MQ=255) tttAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagca < 1:2909233/66‑1 (MQ=255) aaaaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACa < 1:3400910/55‑1 (MQ=255) aaaaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGt > 1:4812050/1‑71 (MQ=255) aaaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGt > 1:4004684/1‑70 (MQ=255) aaaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGt < 1:3234940/70‑1 (MQ=255) aaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCa > 1:5745958/1‑71 (MQ=255) aaaGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCa > 1:2076615/1‑71 (MQ=255) tgctttgcttgtctgTTTTTGACGATAAATTACAAATACGATc < 1:7299464‑M1/28‑1 (MQ=255) tgctttgcttgtctgTTTTTGACGATAAATTACAAATACGATc < 1:765205‑M1/28‑1 (MQ=255) gTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATaa < 1:7802114/71‑1 (MQ=255) gTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATaa < 1:834386/71‑1 (MQ=255) aaggCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATg < 1:2040944/69‑1 (MQ=255) aCGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaagc > 1:3587246/1‑59 (MQ=255) aCGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAAt < 1:4836907/70‑1 (MQ=255) aCGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATg < 1:5083780/71‑1 (MQ=255) aCGGCTGTCAATTTTTTGACGATAAATTACAAATAAGATCAAAAACAGACAAGCAAAGCATGTCATAAAt < 1:4036674/70‑1 (MQ=255) cTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACa > 1:1385579/1‑70 (MQ=255) tGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACaa > 1:3898323/1‑70 (MQ=255) gTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAAt > 1:2368153/1‑64 (MQ=255) gTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACaaa > 1:2963404/1‑70 (MQ=255) tCAATTTTTTGACGATAAATTACAAATACGATCaa < 1:3812113/35‑1 (MQ=255) tCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAAt < 1:6589797/63‑1 (MQ=255) tCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACaaa < 1:5740797/69‑1 (MQ=255) tCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACaaa > 1:6449248/1‑69 (MQ=255) aaTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCAt < 1:1861997/57‑1 (MQ=255) aaTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGa > 1:7688587/1‑63 (MQ=255) aaTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGt > 1:1537702/1‑71 (MQ=255) aaTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGt > 1:1603808/1‑71 (MQ=255) aaTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGt < 1:7789773/71‑1 (MQ=255) aTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaag > 1:5055098/1‑43 (MQ=255) aTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaag > 1:3937267/1‑43 (MQ=255) aTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACaag > 1:4038759/1‑43 (MQ=255) aTTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTg < 1:5751469/71‑1 (MQ=255) ttttttGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATa < 1:5183224/56‑1 (MQ=255) ttttttGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGa > 1:4890863/1‑71 (MQ=255) ttttttGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGa > 1:3948528/1‑71 (MQ=255) TTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaagc > 1:2026933‑M1/1‑47 (MQ=255) TTTTTGACGATAAATTACAAATACGATCAAAAACAGACaagcaaagc > 1:3859587‑M1/1‑47 (MQ=255) | CATTCCTTAAACATTTTGGGATGCGTTCATTTTAATTTCACCAATTGTTTAAAAAGTGACGGCTGTCAATTTTTTGACGATAAATTACAAATACGATCAAAAACAGACAAGCAAAGCATGTCATAAATGACAAAAAGTGA > AP009048/3562946‑3563085 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |