New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AP009048	4015734 =	NA (NA)	3 (0.040)	3/86	NT	32.8%	coding (304/1137 nt)	yhhI	predicted transposase
	?	AP009048	4015766 =	7 (0.090)					coding (272/1137 nt)	yhhI	predicted transposase

CCCTGCGGCGACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCATCCAGT  >  AP009048/4015668‑4015763                                                                   |                              cccTGGGGCGACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCt                           >  1:4598624/1‑71 (MQ=17) cccTGCGGCGACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCt                           >  1:4935307/1‑71 (MQ=32) cccTGCGGCGACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCt                           >  1:2797168/1‑71 (MQ=32)      cggcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTgaaga                      <  1:4588788/71‑1 (MQ=39)      cggcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTgaag                       <  1:4942016/70‑1 (MQ=39)      cggcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTgaag                       <  1:4331421/70‑1 (MQ=39)       ggcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCt                           <  1:5797880/65‑1 (MQ=33)       ggcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCt                           <  1:6305212/65‑1 (MQ=33)        gcgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAAt                    <  1:7219981/71‑1 (MQ=39)         cgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTga                         >  1:1882102/1‑65 (MQ=35)         cgACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTga                         >  1:2728440/1‑65 (MQ=35)          gACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATgg                  <  1:7841182/71‑1 (MQ=39)           aCTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGc                 <  1:2632743/71‑1 (MQ=39)           aCTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGc                 <  1:1149592/71‑1 (MQ=39)             tctTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAg               >  1:366248/1‑71 (MQ=39)             tctTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGCCAg               >  1:3903363/1‑71 (MQ=255)             tctTGTCATAAGAGTGCCGGAGCGTTTTTCCAGCAATTGCAATGACGTCATTATCATCTGAAGAATGGCAg               >  1:1966742/1‑71 (MQ=255)               ttGTCATAAGAGTGCCGGTGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGt              >  1:961250/1‑70 (MQ=255)               ttGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGt              >  1:7377128/1‑70 (MQ=40)                tGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTgaag                       <  1:4405685/60‑1 (MQ=40)                 gTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGt              <  1:5284405/68‑1 (MQ=37)                 gTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGt              <  1:3683985/68‑1 (MQ=37)                 gTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTc             <  1:2348638/69‑1 (MQ=37)                    aTAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCa        >  1:5921752/1‑71 (MQ=34)                    aTAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCa        <  1:1460824/71‑1 (MQ=34)                    aTAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCa        <  1:1281348/71‑1 (MQ=34)                     tAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAA‑AATgg                  >  1:771215/1‑59 (MQ=255)                       agagTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCATc      >  1:6494215/1‑70 (MQ=35)                          gTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCATCCAGt  <  1:1156569/71‑1 (MQ=31)                                                                   |                              CCCTGCGGCGACTCTTGTCATAAGAGTGCCGGAGCGTTTTTCCATCAATTGCAATGACGTCTTTATCATCTGAAGAATGGCAGTCACGCATCCAGT  >  AP009048/4015668‑4015763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.