| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AP009048 | = 1515970 | 54 (0.660) | 9 (0.120) | 3/90 | NT | 13.4% | coding (426/942 nt) | ydcU | predicted spermidine/putrescine transporter subunit |
| ? | AP009048 | = 1515984 | 67 (0.900) | coding (440/942 nt) | ydcU | predicted spermidine/putrescine transporter subunit | |||||
TTTATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCACTGCTGACTGCGT > AP009048/1515915‑1516049 | tttATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCt < 1:796234/70‑1 (MQ=255) ttGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaa > 1:2482159/1‑69 (MQ=255) tAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGc < 1:5186750/71‑1 (MQ=255) aTGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTg < 1:7787400‑M2/57‑2 (MQ=255) cGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAg < 1:7501681/71‑1 (MQ=255) gATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGt > 1:4221038/1‑71 (MQ=255) aTGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTg > 1:7301847/1‑71 (MQ=255) tgtgGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTgg > 1:5225723/1‑71 (MQ=255) tgGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtt < 1:7712110/71‑1 (MQ=255) tgGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtt < 1:5296586/71‑1 (MQ=255) tgGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGt < 1:3793097/70‑1 (MQ=255) ggCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaaaa < 1:5993958/49‑1 (MQ=255) ggCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:7356053/71‑1 (MQ=255) gCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttttt < 1:5239793/71‑1 (MQ=255) gCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt > 1:7303566/1‑70 (MQ=255) gCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTgg > 1:3018114/1‑54 (MQ=255) tACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTacaaca > 1:141100/1‑71 (MQ=255) aCATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaaa < 1:7413663/40‑1 (MQ=255) cATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACAt < 1:2342750/70‑1 (MQ=255) cATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATc > 1:7614260/1‑71 (MQ=255) cATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATc > 1:6669479/1‑71 (MQ=255) cATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATc > 1:7666415/1‑71 (MQ=255) aTTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaa > 1:2796170/1‑37 (MQ=255) aTTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaa > 1:4323971/1‑37 (MQ=255) aTTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCaa > 1:6312975/1‑37 (MQ=255) aTTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGAGGtttt < 1:1022355/61‑1 (MQ=255) ttGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCtt < 1:1116799/71‑1 (MQ=255) tGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGa > 1:400580/1‑39 (MQ=255) tGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTac > 1:7510654/1‑62 (MQ=255) tGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTg > 1:3800056/1‑71 (MQ=255) gTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTg < 1:5348329/70‑1 (MQ=255) ttAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATgg < 1:6488791/40‑1 (MQ=255) ttAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:3150468/56‑1 (MQ=255) ttAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:4288997/56‑1 (MQ=255) ttAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:959540/56‑1 (MQ=255) tAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGAt < 1:539997/37‑1 (MQ=255) aaGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTg > 1:4045483/1‑71 (MQ=255) cTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTg > 1:7878144/1‑45 (MQ=255) tATGCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatcggcaa > 1:3390236‑M2/1‑20 (MQ=255) tATGCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatcggcaa > 1:3156272‑M2/1‑20 (MQ=255) tATGCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatcggcaa > 1:5686581‑M2/1‑20 (MQ=255) aTGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCt < 1:967013/38‑1 (MQ=255) aTGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCt < 1:2166086/58‑1 (MQ=255) aTGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCt < 1:7845262/58‑1 (MQ=255) aTGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCa > 1:6902882/1‑71 (MQ=255) tGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:3092512/47‑1 (MQ=255) tGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:1809138/47‑1 (MQ=255) tGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAAcc < 1:3268939/69‑1 (MQ=255) gCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccaca > 1:3959457‑M2/1‑17 (MQ=255) gCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccaca > 1:6524740‑M2/1‑17 (MQ=255) gCCTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccaca > 1:6059512‑M2/1‑17 (MQ=255) gCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTg > 1:4441583/1‑63 (MQ=255) gCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCa > 1:1954102/1‑69 (MQ=255) ccTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCt < 1:4312261/61‑1 (MQ=255) ccTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCAct < 1:1347729/70‑1 (MQ=255) ccTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCAct < 1:1115274/70‑1 (MQ=255) ccTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTA‑AACATCTTGGGCTGGAACCActgc > 1:3962419/1‑71 (MQ=255) cTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatc < 1:1895797‑M2/49‑35 (MQ=255) cTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatc < 1:4631600‑M2/49‑35 (MQ=255) cTGGACGTTATTGCTggcataggctttaacaatgtagctcgcccacatc < 1:6869205‑M2/49‑35 (MQ=255) cTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:7801396/44‑1 (MQ=255) cTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:513251/44‑1 (MQ=255) cTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:2711108/44‑1 (MQ=255) cTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGtttt < 1:7160957/44‑1 (MQ=255) cTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGAGGtttt < 1:6839260/44‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:4478469/42‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:3983762/42‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:5903863/42‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:6720766/42‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGttt < 1:5106157/42‑1 (MQ=255) tGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCActgct > 1:7333876/1‑71 (MQ=255) ggACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTggg > 1:6884099/1‑56 (MQ=255) ggACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCActgct > 1:4857581/1‑70 (MQ=255) ggACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCActgct > 1:4399153/1‑70 (MQ=255) aCGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTg > 1:3720288/1‑52 (MQ=255) aCGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTg > 1:7141083/1‑52 (MQ=255) cGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCACTGCTGACt < 1:3598959/71‑1 (MQ=255) gTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTacaaca < 1:2924684/45‑1 (MQ=255) gTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTacaaca < 1:2902806/45‑1 (MQ=255) gTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTacaaca < 1:7599907/45‑1 (MQ=255) gTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTacaaca < 1:3971682/45‑1 (MQ=255) gTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCAc < 1:908569/62‑1 (MQ=255) ttATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCAc < 1:1965171/61‑1 (MQ=255) tATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCACTGCTGACTGCg > 1:7027036/1‑71 (MQ=255) aTTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCACTGCTGACTGCGt > 1:3586874/1‑71 (MQ=255) ttGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTggg > 1:4013725/1‑48 (MQ=255) ttGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTggg > 1:2021659/1‑48 (MQ=255) gCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCtt > 1:2438352/1‑43 (MQ=255) gCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCtt > 1:1013006/1‑43 (MQ=255) tGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATATTGGGCTGGAACCACTGCTGa > 1:7472493/1‑60 (MQ=255) | TTTATATTGCGGTAATGTTGCCGATGTGGGCGAGCTACATTGTTAAAGCCTATGCCTGGACGTTATTGCTGGCAAAAGATGGCGTGGCTCAGTGGTTTTTACAACATCTTGGGCTGGAACCACTGCTGACTGCGT > AP009048/1515915‑1516049 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |