Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AP009048	4213629–4216717	4216717	1–3089	20 [15]	[15] 17	rrlE–[rrfE]	rrlE,[rrfE]

ACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAA  >  AP009048/4213558‑4213638                                                                       |           acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGtt            >  1:723354/1‑71 (MQ=34) acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGtt            <  1:1830549/71‑1 (MQ=34) acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGtt            >  1:2386206/1‑71 (MQ=34) acacTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGtt            <  1:657830/71‑1 (MQ=34)   acTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt          <  1:6099671/71‑1 (MQ=34)    cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgtg         <  1:714632/71‑1 (MQ=34)    cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt          >  1:3798410/1‑70 (MQ=35)    cTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtg           >  1:4079721/1‑69 (MQ=35)    cTGAACAACGAAAGTTGTTCGTGAGTCTCTAAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt          <  1:6476904/70‑1 (MQ=25)     tGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTtgt          >  1:1378296/1‑69 (MQ=35)       aacaacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAgg      >  1:846768/1‑71 (MQ=34)       aacaacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCCGGTTGTGAgg      <  1:1840833/71‑1 (MQ=21)         caacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt    <  1:1573515/71‑1 (MQ=34)         caacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt    <  1:7855539/71‑1 (MQ=34)         caacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGt     >  1:115223/1‑70 (MQ=35)          aacGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt    >  1:2545405/1‑70 (MQ=35)           acGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGtt    >  1:5601561/1‑69 (MQ=33)           acGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTaa  <  1:2447770/71‑1 (MQ=32)            cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGtt            <  1:611347/60‑1 (MQ=31)            cGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGa        >  1:6049138/1‑64 (MQ=31)                                                                       |           ACACTGAACAACGAAAGTTGTTCGTGAGTCTCTCAAATTTTCGCAACTCTGAAGTGAAACATCTTCGGGTTGTGAGGTTAA  >  AP009048/4213558‑4213638

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑