Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	AP009048	4213629–4216717	4216717	1–3089	20 [15]	[15] 17	rrlE–[rrfE]	rrlE,[rrfE]

AACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTT  >  AP009048/4216687‑4216787                                |                                                                      aaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAg                                <  1:7514946/71‑1 (MQ=31)    gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaa                             <  1:3398803/71‑1 (MQ=35)    gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaa                             <  1:7180886/71‑1 (MQ=35)      cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaaaa                           >  1:7291319/1‑71 (MQ=39)         aGCGCCGAAGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAccc                        >  1:7854156/1‑71 (MQ=255)          gcgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAccc                        <  1:1096703/70‑1 (MQ=255)          gcgcCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAccc                        <  1:3942900/70‑1 (MQ=255)           cgcCGATGGTAGTGTGGGGGCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaa                             <  1:4496676/64‑1 (MQ=255)              cGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTc                   <  1:2555201/71‑1 (MQ=255)               gATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGt                    >  1:823461/1‑69 (MQ=255)               gATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                  <  1:2210896/71‑1 (MQ=255)                aTGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCa                 <  1:7050202/71‑1 (MQ=255)                    tAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATa               <  1:5577163/69‑1 (MQ=255)                       tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGaaaa                            <  1:230990/53‑1 (MQ=40)                               ctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGtttt  >  1:3318956/1‑71 (MQ=255)                                tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAg                                <  1:4474899/40‑1 (MQ=33)                                tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAg                                <  1:2654458/40‑1 (MQ=33)                                |                                                                      AACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGGCCGGGGTTTT  >  AP009048/4216687‑4216787

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑