| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 1036921 | 80 (1.300) | 12 (0.230) +GTTTGCC |
4/84 | NT | 15.5% | coding (89/1059 nt) | rsxD | predicted inner membrane oxidoreductase |
| ? | Exported | 2889317 = | 73 (1.190) | intergenic (‑60/+263) | ytfL/msrA | predicted inner membrane protein/methionine sulfoxide reductase A | |||||
GTTGCTCGCAGCCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1036904‑1036921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATACACATTGAAAGCCGATT > Exported/2889317‑2889336 ||||||| aTTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGATc < 1:1634870/44‑2aTTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGATc < 1:4407867/44‑2aTTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGATc < 1:83254/44‑2 TTGCTCGCAGGCGTGCCTTTTGCCATACACATTGAAAGACGA < 1:1091202/42‑1 TTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGa > 1:1614225/1‑38 TTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGa > 1:3475854/1‑38 TTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGa > 1:82173/1‑38 TTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGA < 1:802490/42‑1 TTGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAG > 1:2396428/1‑38 TGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGATc > 1:4957110/1‑42 TGCTCGCAGGCGTGCCGTTTGCCATACACATTGAAA < 1:610549/36‑1 TCGCAGGCGTGCCGTTTGCCATACACATTGAAAGACGAT < 1:622591/39‑1 ||||||| GTTGCTCGCAGCCGTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > Exported/1036904‑1036921‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATACACATTGAAAGCCGATT > Exported/2889317‑2889336 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |