| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 436833 | 60 (0.980) | 103 (1.680) | 61/98 | NT | 62.6% | coding (546/546 nt) | seqA | regulatory protein for replication initiation |
| ? | Exported | 1803907 = | 63 (1.030) | intergenic (+63/‑28) | ygaH/mprA | predicted inner membrane protein/DNA‑binding transcriptional regulator | |||||
Only 100 of 205 total aligned reads displayed.
ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGA > Exported/436765‑436902 | tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa < 1:4740644/70‑1 (MQ=255) tCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAAc < 1:5510300/71‑1 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:354619‑M1/71‑8 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:39114‑M1/71‑8 (MQ=255) acacATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga < 1:1480682‑M1/71‑8 (MQ=255) cacaTCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctga > 1:5260996‑M1/1‑63 (MQ=255) tcatGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa < 1:711305/59‑1 (MQ=255) catGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:5593927‑M1/1‑58 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:5661883‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:209864‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaat > 1:5270447‑M1/1‑57 (MQ=255) atGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgaca > 1:1540195/1‑70 (MQ=255) tGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatg < 1:3570577‑M1/71‑16 (MQ=255) aGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaagg < 1:3060394/70‑1 (MQ=255) tCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtc < 1:724702‑M1/71‑21 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:624053‑M1/1‑50 (MQ=255) cGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:4216469‑M1/1‑50 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtca < 1:1391962‑M1/70‑22 (MQ=255) gATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaa > 1:225271‑M1/1‑49 (MQ=255) aTGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggt < 1:2016064‑M1/67‑20 (MQ=255) aTTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca > 1:2929694‑M1/1‑43 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt > 1:3144849/1‑47 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt > 1:3214788/1‑47 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGtt > 1:695642/1‑47 (MQ=255) tCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGc > 1:2290587/1‑49 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTaa > 1:41645/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:4749513‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaa > 1:923369‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:1319248‑M1/1‑40 (MQ=255) cccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGc > 1:3346777/1‑70 (MQ=255) ccGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatg > 1:3896925‑M1/1‑39 (MQ=255) cggcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:865384‑M1/71‑34 (MQ=255) ggcggAATTGATTGAGAAGGCTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggat < 1:2379329‑M1/71‑35 (MQ=255) gcggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatgga < 1:3303595‑M1/69‑34 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:1475676/1‑36 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTaaaa > 1:123904/1‑36 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggata > 1:3265913‑M1/1‑34 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt > 1:2685751/1‑61 (MQ=255) ggAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAAt > 1:5419014/1‑61 (MQ=255) aaTTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:2787381/71‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAcggctgaaattaa > 1:5373419‑M1/1‑31 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:3093471/70‑1 (MQ=255) attgattgAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAAt < 1:934237/71‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt < 1:2977401‑M1/71‑42 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:2974920/53‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaggacaaag < 1:3736808/53‑1 (MQ=255) ttgattgaGAAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaaagaca < 1:13069/50‑1 (MQ=255) tgattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:4446327‑M1/1‑29 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:4720496‑M1/1‑28 (MQ=255) gattgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatga > 1:4282096‑M1/1‑28 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttac > 1:2050388‑M1/1‑26 (MQ=255) ttgaGAAGGTTTGCGGAACTATCTAAcggctgaaatta < 1:5528159‑M1/38‑13 (MQ=255) tgaGAAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggata > 1:77786‑M1/1‑25 (MQ=255) gagaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAg > 1:4018624/1‑71 (MQ=255) agaAGGTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcc < 1:3888945‑M1/71‑49 (MQ=255) agaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:3012298/1‑71 (MQ=255) gaAGGTTTGCGGAACTATCTAAAACGTTGCAgacaaag < 1:3957461/38‑1 (MQ=255) gaAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGc < 1:1961697/71‑1 (MQ=255) aaGTTTTGCGGAACTATCTAAcggctgaaattaatgaggtcataccca < 1:2834025‑M1/48‑28 (MQ=255) aaGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACaa < 1:2312781/60‑1 (MQ=255) gTTTGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattg < 1:5207784‑M1/71‑54 (MQ=255) tttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattga < 1:3588813‑M1/71‑55 (MQ=255) tttGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAAcc > 1:4623593/1‑71 (MQ=255) ttGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaa > 1:5340609‑M1/1‑16 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaa > 1:4832080‑M1/1‑15 (MQ=255) tGCGGAACTATCTAAcggctgaaattaatgaggtca > 1:4864890‑M1/1‑15 (MQ=255) gCGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccatttaac < 1:227536‑M1/70‑57 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaa < 1:3699481‑M1/71‑59 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:1378152‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:4386602‑M1/70‑58 (MQ=255) cGGAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaaca < 1:4075989‑M1/70‑58 (MQ=255) ggAACTATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaa < 1:4561155‑M1/71‑60 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:2571691/63‑1 (MQ=255) ggAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCa < 1:4976035/63‑1 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:5412770/1‑70 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:3182850/1‑70 (MQ=255) gAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac > 1:1784187/1‑70 (MQ=255) aaCTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGcac < 1:730090/69‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:3768922/51‑1 (MQ=255) cTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGt < 1:2415066/51‑1 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:176265‑M1/1‑7 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:169182‑M1/1‑7 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:1402459‑M1/1‑7 (MQ=255) tATCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtt > 1:859800‑M1/1‑7 (MQ=255) aTCTAAcggctgaaattagtgaggtcatacccaaatggatagttcgttta > 1:3293552‑M1/1‑6 (MQ=255) aTCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCacaaca > 1:5231809/1‑69 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacg < 1:5631433‑M1/51‑47 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:2227980‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:5088766‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:2743988‑M1/1‑5 (MQ=255) tCTAAcggctgaaattaatgaggtcatacccaaatggatagttcgt > 1:104581‑M1/1‑5 (MQ=255) tCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATc > 1:3676725/1‑46 (MQ=255) cTAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgccca > 1:5044522‑M1/1‑4 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaat > 1:2942976‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:185171‑M1/1‑3 (MQ=255) tAAcggctgaaattaatgaggtcatacccaaatggatagtacgttaa > 1:5489498‑M1/1‑3 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgtttacgcccattgaacaaatgctaaaatt < 1:4663518‑M1/70‑70 (MQ=255) acggctgaaattaatgaggtcatacccaaatggatagttcgttta > 1:1300971‑M1/1‑1 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAgg > 1:1579926/1‑49 (MQ=255) aaaCGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGc > 1:2637459/1‑50 (MQ=255) | ATCGAACACATCATGCAGTCGATGCAATTCCCGGCGGAATTGATTGAGAAGGTTTGCGGAACTATCTAAAACGTTGCAGACAAAGGACAAAGCAATGGCAATCCACAATCGTGCAGGCCAACCTGCACAACAGAGTGA > Exported/436765‑436902 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |