| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 45412 = | 57 (0.930) | 7 (0.120) +AC |
3/94 | NT | 8.3% | coding (489/531 nt) | kefF | flavoprotein subunit for the KefC potassium efflux system |
| ? | Exported | = 2082513 | 104 (1.690) | coding (660/777 nt) | exuR | DNA‑binding transcriptional repressor | |||||
Only 100 of 128 total aligned reads displayed.
TCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGC > Exported/2082446‑2082581 | tCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACAcc < 1:4766123/71‑1 (MQ=255) cTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCa < 1:5541256/70‑1 (MQ=255) aaGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAaca > 1:2849403/1‑64 (MQ=255) aGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATc < 1:2401224/71‑1 (MQ=255) gcTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATg > 1:2260968/1‑70 (MQ=255) cTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGtt < 1:3905131/71‑1 (MQ=255) cTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGt > 1:3312370/1‑70 (MQ=255) aTTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAaca > 1:3425702/1‑55 (MQ=255) aTTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAaca > 1:2481228/1‑55 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCa < 1:5066457/63‑1 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCa < 1:820271/63‑1 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCa < 1:4111762/63‑1 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTAttt < 1:3179886/71‑1 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTAttt < 1:1595999/71‑1 (MQ=255) ttCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTAtt > 1:620519/1‑70 (MQ=255) gCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAAc < 1:2157921/71‑1 (MQ=255) aaaaagaTGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACgttaagcaacgtctgctggaa < 1:5359282‑M2/69‑22 (MQ=255) aaaaagaTGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACgttaagcaacgtctgctggaa < 1:3555868‑M2/69‑22 (MQ=255) aaaGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACgttaagcaacgtctgctggaatt > 1:4136953‑M2/1‑48 (MQ=255) aaaGATGCCCGAGCGGCGAAGCTGGCAATGTGGCAGCATCTGGAAAACgttaagcaacgtctgctggaatt < 1:1263639‑M2/71‑24 (MQ=255) aaaGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGa > 1:3969747/1‑55 (MQ=255) aaaGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAAc > 1:454871/1‑69 (MQ=255) aaaGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACg > 1:4696793/1‑70 (MQ=255) aaGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGt > 1:1785330/1‑60 (MQ=255) aaGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGaa < 1:859817/71‑1 (MQ=255) aTCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCaa > 1:604316/1‑49 (MQ=255) ccTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTaa > 1:491113/1‑62 (MQ=255) cTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:448710/71‑1 (MQ=255) cTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:91421/71‑1 (MQ=255) tCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc > 1:3115983/1‑70 (MQ=255) aTGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGaaa > 1:2111273/1‑63 (MQ=255) tgctgcTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:5579645/70‑1 (MQ=255) tgctgcTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1444918/70‑1 (MQ=255) tgctgcTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:2886073/70‑1 (MQ=255) gctgctAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgacga > 1:2789811/1‑71 (MQ=255) aaGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTc > 1:5516519/1‑69 (MQ=255) aGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATg < 1:2327920/41‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt < 1:4742126/71‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt < 1:4753756/71‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt < 1:5644623/71‑1 (MQ=255) cTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt < 1:2012464/71‑1 (MQ=255) tgCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTc < 1:5381727/63‑1 (MQ=255) gCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCaa < 1:4282205/71‑1 (MQ=255) gCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:4457891/70‑1 (MQ=255) gCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCa < 1:4206032/70‑1 (MQ=255) cAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAAt < 1:4010267/71‑1 (MQ=255) aaTGTGGCAGCATCTGGAAAACgttaagcaacgtctgctgg > 1:4650531‑M2/1‑22 (MQ=255) aaTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:1897769/55‑1 (MQ=255) aTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTc < 1:399454/60‑1 (MQ=255) aTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTc < 1:4270839/60‑1 (MQ=255) aTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:5258506/61‑1 (MQ=255) aTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCg < 1:1417072/61‑1 (MQ=255) aTGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:2459469/66‑1 (MQ=255) tgtgGCAGCATCTGGAAAACgttaagcaacgtctgctggaa < 1:2113237‑M2/41‑22 (MQ=255) tgtgGCAGCATCTGGAAAACgataagcaacgtctgctggaa < 1:4192985‑M2/41‑22 (MQ=255) gtgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAAt > 1:2660585/1‑67 (MQ=255) gtgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:1894807/1‑70 (MQ=255) gtgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:1324392/1‑70 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgacga > 1:2298240/1‑53 (MQ=255) tgGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3409069/63‑1 (MQ=255) gcagcaTCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:3031972/61‑1 (MQ=255) gcaTCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGc > 1:1971934/1‑70 (MQ=255) tCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac < 1:3196544/43‑1 (MQ=255) tCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGc > 1:4624760/1‑60 (MQ=255) cTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt > 1:1844243/1‑53 (MQ=255) cTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGtt < 1:5012824/53‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:1081378/1‑37 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAg > 1:3617542/1‑37 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgacga > 1:3576762/1‑43 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgacga > 1:83764/1‑43 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGcgacga > 1:5185212/1‑43 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:4350217/38‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:204293/38‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:2054810/38‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:1323941/38‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGc < 1:5437653/38‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTc < 1:4003473/53‑1 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATgac > 1:572316/1‑57 (MQ=255) tGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:3023202/1‑59 (MQ=255) tGGAAAACACAAAGATCATGTTATTTAACGAAACCAGagacga > 1:5362024/1‑43 (MQ=255) ggAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:5266940/1‑58 (MQ=255) ggAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGcc > 1:5435708/1‑58 (MQ=255) ggAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGctatctat > 1:1097681/1‑71 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac > 1:182006/1‑39 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac > 1:175166/1‑39 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGcgac > 1:3348034/1‑39 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGcga > 1:3863320/1‑38 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGa < 1:1831815/47‑1 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGa < 1:1821274/47‑1 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGa > 1:1074803/1‑59 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGAc > 1:835906/1‑60 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGAc > 1:842560/1‑60 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGAc > 1:3677495/1‑60 (MQ=255) gAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGctatct < 1:907534/68‑1 (MQ=255) aaaaCACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGa > 1:4093325/1‑58 (MQ=255) aaaaCACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGa > 1:3068458/1‑58 (MQ=255) aaaaCACCAAGATCATGTTATTTAAAGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTc < 1:2561094/71‑1 (MQ=255) aaaCACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGt > 1:2057358/1‑47 (MQ=255) aaaCACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCg < 1:4055024/71‑1 (MQ=255) aaCACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGc > 1:299192/1‑71 (MQ=255) | TCCTCAAGGCGCTGATTCGCAAAGATCCTCATGCTGCTAAGCTGGCAATGTGGCAGCATCTGGAAAACACCAAGATCATGTTATTTAACGAAACCAGCGACGACTTCGAGTTCAATGCCGACCGCTATCTATTCGC > Exported/2082446‑2082581 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |