| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 826008 | 47 (0.770) | 13 (0.280) +ACGGCTACATCA |
4/74 | NT | 26.3% | coding (405/1254 nt) | ychP | predicted invasin |
| ? | Exported | 1727040 = | 50 (0.810) | coding (1190/3888 nt) | purL | phosphoribosylformyl‑glycineamide synthetase | |||||
ATGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTAA > Exported/1726971‑1727103 | aTGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGtt < 1:3964794/71‑1 (MQ=255) tGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGtt > 1:953641/1‑70 (MQ=255) ccGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt > 1:3704768/1‑71 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttc > 1:4412116/1‑71 (MQ=255) aTCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttc > 1:3024929/1‑71 (MQ=255) cccgcccgCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttctt > 1:1649062/1‑71 (MQ=255) cgcccgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttttt > 1:3104228/1‑66 (MQ=255) cccgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCa > 1:4225240/1‑69 (MQ=255) ccgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACttt < 1:2105456/61‑1 (MQ=255) cgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAg > 1:3595241/1‑71 (MQ=255) cgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAg > 1:2930225/1‑71 (MQ=255) cgccAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAg > 1:2593605/1‑71 (MQ=255) tGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:2450453/60‑1 (MQ=255) tGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAg > 1:1094990/1‑71 (MQ=255) aTCGGTTTCTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATa > 1:386306/1‑59 (MQ=255) tCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAg > 1:1195356/1‑71 (MQ=255) cGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGc > 1:720797/1‑71 (MQ=255) gTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCa < 1:3874898/53‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGt < 1:3891038/38‑1 (MQ=255) tttGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTttct < 1:3433953/49‑1 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTc > 1:5357275/1‑38 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTc > 1:128441/1‑38 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:5565854/70‑1 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt > 1:2300150/1‑70 (MQ=255) tgtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACGTTTTCTTCATAAGTACGGAAGTAGCCGtt > 1:341036/1‑70 (MQ=255) gtgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTc < 1:2056853/70‑1 (MQ=255) tgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACtttt < 1:4877927/42‑1 (MQ=255) tgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:218178/49‑1 (MQ=255) tgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCAt < 1:1399174/49‑1 (MQ=255) tgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTa < 1:3768926/54‑1 (MQ=255) tgATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTa < 1:1244586/54‑1 (MQ=255) aTAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:4455137/66‑1 (MQ=255) tAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:2480026/65‑1 (MQ=255) tAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGc < 1:5626916/71‑1 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCg < 1:4867830/71‑1 (MQ=255) aCCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTAAGGAAGTAGCCGTTCa > 1:4355068/1‑65 (MQ=255) ctttatgacaacttgacggctacatcaTTCACTTTttctt < 1:3123572‑M2/13‑1 (MQ=255) ctttatgacaacttgacggctacatcaTTCACTTTttctt < 1:16722‑M2/13‑1 (MQ=255) ctttatgacaacttgacggctacatcaTTCACTTTttctt < 1:912676‑M2/13‑1 (MQ=255) cgcgCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTa > 1:4807457/1‑47 (MQ=255) cgcgCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGga > 1:4848593/1‑71 (MQ=255) cgcgCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGga > 1:4782179/1‑71 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTttcttc < 1:1151427‑M2/14‑1 (MQ=255) ttatgacaacttgacggctacatcaTTCACTTTttctt < 1:4707470‑M2/13‑1 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTttctt > 1:1422022‑M2/25‑37 (MQ=255) tatgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:1529032‑M2/25‑42 (MQ=255) atgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:2838818‑M2/24‑41 (MQ=255) atgacaacttgacggctacatcaTTCACTTTTTCTTCACaa > 1:1931904‑M2/24‑41 (MQ=255) tgacaacttgacggctacatcaTTCACTTTttctt < 1:122654‑M2/13‑1 (MQ=255) tgacaacttgacggctacatcaTTCACTTTttctt < 1:4611002‑M2/13‑1 (MQ=255) tgacaacttgacggctacatcaTTCACTTTTTCTTcac < 1:2463354‑M2/16‑2 (MQ=255) ctctTCGCCGTTGTTGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAg > 1:4414685/1‑57 (MQ=255) ctctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAg > 1:1040000/1‑57 (MQ=255) ctctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAg > 1:4363339/1‑57 (MQ=255) caaattgacggctacatcaTTCACTTTTTCTTcac > 1:5212061‑M2/20‑34 (MQ=255) ctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTAc > 1:1950646/1‑39 (MQ=255) ctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACg > 1:717770/1‑40 (MQ=255) ctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAAt > 1:4725206/1‑71 (MQ=255) ctTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAACTACg > 1:1926732/1‑40 (MQ=255) ttCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCaaa < 1:4899068/69‑1 (MQ=255) ttCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCaaa < 1:1347499/69‑1 (MQ=255) cGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCg > 1:4441100/1‑71 (MQ=255) gCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCgt > 1:2964034/1‑71 (MQ=255) gCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCgt < 1:2679093/71‑1 (MQ=255) ttGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTc < 1:1961371/45‑1 (MQ=255) gtgGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTa > 1:5643241/1‑70 (MQ=255) gtgGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGAAGACCAAATTCGTTGTTa > 1:1201873/1‑70 (MQ=255) tgGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTaa < 1:2080117/70‑1 (MQ=255) ggCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGtt < 1:1712058/40‑1 (MQ=255) ttCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCgtt < 1:1756327/59‑1 (MQ=255) | ATGTTGCCGATCCCGCCCGCCAGCATGATCGGTTTGTGATAACCGCGCAGCTCTTCGCCGTTGTGGCTGTTCACTTTTTCTTCATAAGTACGGAAGTAGCCGTTCAGTGCCGGACGACCAAATTCGTTGTTAA > Exported/1726971‑1727103 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |