| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | 1032435 = | 91 (1.480) | 14 (0.300) +TTTCATTTAATT |
9/74 | NT | 26.4% | intergenic (+68/‑205) | blr/ydgT | beta‑lactam resistance membrane protein/predicted regulator |
| ? | Exported | 2331379 = | 13 (0.210) | intergenic (‑284/+146) | sodA/fdhD | superoxide dismutase, Mn/formate dehydrogenase formation protein | |||||
GACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGC > Exported/2331313‑2331443 | gACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATaagaagat > 1:1588982/1‑67 (MQ=255)gACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATaagaagat > 1:5007925/1‑67 (MQ=255)gACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATaagaagat > 1:3456334/1‑67 (MQ=255)gACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATaagaagat > 1:3008556/1‑67 (MQ=255) aCAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTta < 1:123194/71‑1 (MQ=255) aGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTtata < 1:4377353/71‑1 (MQ=255) gCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTtata < 1:5342370/70‑1 (MQ=255) gCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTtata < 1:4315823/70‑1 (MQ=255) tttttACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAatat < 1:5451022/69‑1 (MQ=255) aTCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATaagaaga > 1:1939628/1‑46 (MQ=255) aTCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAagag < 1:4432351/69‑1 (MQ=255) aTCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAagag < 1:2553897/69‑1 (MQ=255) ggAGATGTGACGCGATGAAAAATGATGAGGATAAGAAGCCTtata < 1:5019674/45‑1 (MQ=255) ggAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTtata < 1:3914714/45‑1 (MQ=255) aTGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAat > 1:338442/1‑44 (MQ=255) aTGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAAGAGAGTGAACAtaataa < 1:5390712/71‑1 (MQ=255) tgACGCGACGAAAAATGATGAGGATAAGAAGCCTta < 1:3872239/36‑1 (MQ=255) tgACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAAt > 1:3602507/1‑70 (MQ=255) gaagataataaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGa < 1:2799766‑M2/29‑1 (MQ=255) aagataataaattccttttcatttaattGCCTtat < 1:212814‑M2/7‑1 (MQ=255) gataataaattccttttcatttaattGCCTTATAAatata > 1:2871716‑M2/27‑40 (MQ=255) gataataaattccttttcatttaattGCCTTATAAatata > 1:2869360‑M2/27‑40 (MQ=255) ataataaattccttttcatttaattGCCTTATAAatat > 1:997944‑M2/26‑38 (MQ=255) ataataaattccttttcatttaattGCCTTATAAatat > 1:2657724‑M2/26‑38 (MQ=255) aataaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACAtaataa > 1:2449052‑M2/24‑61 (MQ=255) aataaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAAt < 1:1952751‑M2/40‑1 (MQ=255) ataaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGa < 1:3089464‑M2/49‑1 (MQ=255) taaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGaaaaa > 1:991937‑M2/22‑67 (MQ=255) taaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGaaaaa > 1:3637616‑M2/22‑67 (MQ=255) taaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:5047823‑M2/50‑1 (MQ=255) taaattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:2912150‑M2/50‑1 (MQ=255) aattccttttcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaaaa > 1:4206228‑M2/20‑71 (MQ=255) ttttcatttaattGCCTTATAAATATATAGATAAGAGAGTg < 1:4838721‑M2/28‑1 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaaa > 1:218657‑M2/11‑61 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:245236‑M2/50‑1 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:4527770‑M2/50‑1 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:3003371‑M2/50‑1 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTa > 1:4461156‑M2/11‑70 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTa > 1:4421027‑M2/11‑70 (MQ=255) tcatttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTa > 1:3996636‑M2/11‑70 (MQ=255) catttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTaca > 1:3988647‑M2/10‑71 (MQ=255) atttaattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGaaaa < 1:926901‑M2/45‑1 (MQ=255) taattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGaa < 1:4043226‑M2/50‑1 (MQ=255) taattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCa > 1:3702474‑M2/6‑62 (MQ=255) aattGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGaaaa < 1:5583209‑M2/45‑1 (MQ=255) attGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGc < 1:737917‑M2/65‑1 (MQ=255) | GACAGCACGATTTTTACACTCATCTCGTCGGAGATGTGACGCGACGAAAAATGATGAGGATAAGAAGCCTTATAAATATATAGATAAGAGAGTGAACATAATAAATGAAAAAAGAAAACGCCACTACACGC > Exported/2331313‑2331443 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |