| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | Exported | = 215622 | 56 (0.760) | 191 (5.950) +TTTAATATCAGTAAACCGGACATAACC |
41/42 | NT | 87.5% | coding (732/732 nt) | dnaQ | DNA polymerase III epsilon subunit |
| ? | Exported | 2705182 = | 69 (0.940) | intergenic (+106/‑1) | damX/dam | hypothetical protein/DNA adenine methylase | |||||
Only 100 of 546 total aligned reads displayed.
GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > Exported/215553‑215692 | gATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt > 1:4410058‑M1/1‑70 (MQ=255) ttGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:4130657‑M1/71‑4 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt < 1:3037035‑M1/70‑4 (MQ=255) tGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttt > 1:4772086‑M1/1‑67 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttta > 1:3176220‑M1/1‑66 (MQ=255) gCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGC‑‑CTGGCGAGCATAAttta > 1:1227704‑M1/1‑64 (MQ=255) cAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa < 1:3322033‑M1/70‑6 (MQ=255) gCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat < 1:929796‑M1/71‑9 (MQ=255) cTCATGAAGCGCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatat > 1:4048789‑M1/1‑62 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttta > 1:3643108‑M1/1‑60 (MQ=255) cATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:2831194/62‑1 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag > 1:484323‑M1/1‑59 (MQ=255) aTGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcag < 1:4020427‑M1/70‑12 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:2093‑M1/71‑14 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:4921499‑M1/71‑14 (MQ=255) tGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagta < 1:969676‑M1/71‑14 (MQ=255) gAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAgg > 1:4475885/1‑71 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaa < 1:1041853‑M1/71‑16 (MQ=255) aaGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaa > 1:4562377‑M1/1‑56 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgg < 1:4374167‑M1/71‑20 (MQ=255) ccGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAttta > 1:605357‑M1/1‑52 (MQ=255) cGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccg < 1:178882‑M1/69‑19 (MQ=255) tctcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAAt < 1:199149/51‑1 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:1614914‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggaca > 1:2561015‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAt > 1:3294096‑M1/1‑47 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:1979244/1‑70 (MQ=255) tcGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaa > 1:1538400/1‑69 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataac > 1:2726267‑M1/1‑45 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacata < 1:1435832‑M1/69‑25 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacata < 1:1309653‑M1/69‑25 (MQ=255) gATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat < 1:2991017‑M1/68‑24 (MQ=255) aTCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATaaa > 1:3400080/1‑45 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaata > 1:3547465‑M1/1‑41 (MQ=255) tGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaata > 1:4313065‑M1/1‑41 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatg > 1:5004079‑M1/1‑39 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataaccc < 1:4246648‑M1/67‑29 (MQ=255) gTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaata > 1:2141583‑M1/1‑39 (MQ=255) gCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatg > 1:2506840‑M1/1‑37 (MQ=255) gaagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaa > 1:3864310‑M1/1‑34 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca < 1:1065885‑M1/43‑11 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca < 1:552138‑M1/43‑11 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatc < 1:1722209‑M1/42‑10 (MQ=255) aagaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaa < 1:2300372/54‑1 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:1896754/1‑55 (MQ=255) agaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTaaaaa > 1:3356453/1‑55 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa > 1:2880769‑M1/1‑31 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAttta < 1:1934855‑M1/35‑5 (MQ=255) gaaAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtt < 1:3607367/71‑1 (MQ=255) aaaGGCGGAAGTTGCCTCTG‑‑GAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcg > 1:3502672‑M1/1‑28 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatc > 1:3806185‑M1/1‑29 (MQ=255) aaGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGAtttt > 1:2867682/1‑71 (MQ=255) gCGGAAGTTGCCTCTGGCGAGCATAAtttaatatca < 1:751633‑M1/36‑11 (MQ=255) ggAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctt < 1:4096506‑M1/71‑48 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaa < 1:5089367‑M1/60‑38 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTgcag > 1:854077/1‑70 (MQ=255) gAAGTTGCCTCTGGCGAGCATAAATACATGTGAAAGGCGCTaa < 1:3142866/43‑1 (MQ=255) aGTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttt > 1:2273388‑M1/1‑21 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgctttttt < 1:3448424‑M1/71‑52 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:1381198‑M1/58‑39 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccat > 1:4689663‑M1/1‑20 (MQ=255) gTTGCCTCTGGCGAGCATAAtttaatatcagtaaaccgg < 1:2763166‑M1/39‑20 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:3528212‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:503810‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg < 1:2943815‑M1/71‑53 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaac < 1:4637885‑M1/35‑17 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaac < 1:2629794‑M1/35‑17 (MQ=255) ttGCCTCTGGCGAGCATAAtttaatatcagtaaac < 1:2680962‑M1/35‑17 (MQ=255) tGCCTCTGGCGAGCATAAtttaatatcagtaaacctgacataacccatgaagaaaaatcgcgcttttttg < 1:3942530‑M1/70‑53 (MQ=255) tGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:1116668‑M1/57‑40 (MQ=255) tGCCTCTGGCGAGCATAAtttaatatcagtaaaccggacat > 1:2380335‑M1/1‑18 (MQ=255) tGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTg > 1:1818926/1‑62 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:2009945‑M1/70‑54 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttg > 1:3967314‑M1/1‑17 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa > 1:1579203‑M1/1‑17 (MQ=255) gCCTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatga > 1:5064518‑M1/1‑17 (MQ=255) ccTCTGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaa < 1:62798‑M1/70‑55 (MQ=255) ccTCTGGCGAGCATAAtttaatatcagtaaaccggacataacc > 1:3707463‑M1/1‑16 (MQ=255) ccTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGa < 1:700985/70‑1 (MQ=255) ctctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:3656472‑M1/68‑54 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttga < 1:669636‑M1/67‑54 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:1474429‑M1/53‑40 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacat < 1:3086833‑M1/37‑24 (MQ=255) tctGGCGAGCATAAtttaatatcagtaaaccggacat < 1:4746515‑M1/37‑24 (MQ=255) ctGGCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa > 1:3740028‑M1/1‑13 (MQ=255) ggCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg > 1:460076‑M1/1‑11 (MQ=255) ggCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgc > 1:163208‑M1/1‑11 (MQ=255) gCGAGCATTAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca < 1:4969030‑M1/71‑62 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggca < 1:4172558‑M1/71‑62 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggc < 1:2179413‑M1/70‑61 (MQ=255) gCGAGCATAAtttaatatcagtaaaccggacataaccca > 1:518119‑M1/1‑10 (MQ=255) cGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtggg < 1:3992937‑M1/68‑60 (MQ=255) cGAGCATAAtttaatatcagtaaaccggacataacccatgaagaaaa < 1:1005571‑M1/47‑39 (MQ=255) aGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcaggg < 1:4213606‑M1/71‑65 (MQ=255) aGCATAAtttaatatcagtaaaccggacataacccatgaagaaaaa < 1:2236393‑M1/46‑40 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggc > 1:2442264‑M1/1‑3 (MQ=255) tAAtttaatatcagtaaaccggacataacccatgaagaaaaat > 1:4489177‑M1/1‑3 (MQ=255) atttaatatcagtaaaccggacataacccatgaagaaaaatcgcgcttttttgaagtgggcagggggcaag < 1:1160581‑M1/71‑71 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGaa > 1:1674853/1‑70 (MQ=255) aaTACCTGTGAAAGGCGCTAAAAATAACGACTTGGGc < 1:323455/37‑1 (MQ=255) | GATTGCAGCTCATGAAGCCCGTCTCGATCTGGTGCAGAAGAAAGGCGGAAGTTGCCTCTGGCGAGCATAAATACCTGTGAAAGGCGCTAAAAATAGCGACTTGGGCGATTTTTGCAGCAAACGATTCAAAAGATGAGAAA > Exported/215553‑215692 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |